View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_11 (Length: 421)
Name: NF1721_low_11
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 3703054 - 3702653
Alignment:
| Q |
17 |
aataatacatgaaacaaaagaatgttgcaatttt-attaattgatctcttatttggctatgaaagtgtatataattgagttacaactctgaatctaacca |
115 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703054 |
aataatacatgaaagaaaagaatgttgcaatttttattaattgatctcttatttggctatgaaagtgtatataattgagttacaactctgaatctaacca |
3702955 |
T |
|
| Q |
116 |
tacatcttatcttatacaaagccacttcaacattatgtaaataaa----caaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatc |
211 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702954 |
tacatcttatcttatacaaagccacatcaacattatgtaaataaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatc |
3702855 |
T |
|
| Q |
212 |
aaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3702854 |
aaaatacaacaaataacacaaagttcttaatcttataagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctct |
3702755 |
T |
|
| Q |
312 |
agccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatc |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3702754 |
agccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcacctttcatc |
3702655 |
T |
|
| Q |
412 |
tc |
413 |
Q |
| |
|
|| |
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|
| T |
3702654 |
tc |
3702653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 143 - 413
Target Start/End: Complemental strand, 3699231 - 3698965
Alignment:
| Q |
143 |
caacattatgtaaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaat |
242 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
3699231 |
caacattatgtaaataaaca----gcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaat |
3699136 |
T |
|
| Q |
243 |
cttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
342 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3699135 |
cttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
3699036 |
T |
|
| Q |
343 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctc |
413 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3699035 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctc |
3698965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 3699405 - 3699346
Alignment:
| Q |
17 |
aataatacatgaaacaaaagaatgttgcaattttattaattgatctcttatttggctatg |
76 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3699405 |
aataatccatgaaacaaaagaatgttgcaattttattaattgatctcttatttggctatg |
3699346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 3699283 - 3699251
Alignment:
| Q |
115 |
atacatcttatcttatacaaagccacttcaaca |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
3699283 |
atacatcttatcttatacaaagccacttcaaca |
3699251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
| Q |
346 |
tcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
401 |
Q |
| |
|
||||||| |||||||||||| | || ||||| | |||||||||||||||||||||| |
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|
| T |
39718924 |
tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc |
39718869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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