View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_12 (Length: 412)
Name: NF1721_low_12
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 6 - 398
Target Start/End: Original strand, 26722622 - 26723017
Alignment:
| Q |
6 |
aggagcacagacgcatgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtccnnnnnnnnnn---ccttcctgcaattgg |
102 |
Q |
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| T |
26722622 |
aggaacacaaacgcatgatgttgcatgttaagaaaataaagtcaagtgcttaaattggtatagtttctgtcctttttttttttttccttcctgcaattgg |
26722721 |
T |
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| Q |
103 |
tatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggtaa |
202 |
Q |
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| T |
26722722 |
tatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgaagttatcttttgatttttggtaa |
26722821 |
T |
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| Q |
203 |
gttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactaacgatctaatttatttttgaagatgttggcatatgattttgtcaatc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722822 |
gttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactcacgatctaatttatttttgaagatgttggcatatgattttgtcaatc |
26722921 |
T |
|
| Q |
303 |
aatcttggacaagaaagctactgcagtagtcttggtcgatgattatggcaacatgtgtgggattgcatacttatttatgcatcaagaccatataac |
398 |
Q |
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| T |
26722922 |
aatcttggacaagaaagctactgcagtagtcttggtcgatgattatggcaacatgtgtgggattgcatacttatttatgcatcaagaccatataac |
26723017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 114 - 291
Target Start/End: Complemental strand, 26837902 - 26837731
Alignment:
| Q |
114 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggtaagttaatttatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || ||||| || |
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| T |
26837902 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaag------tgatgttatctttgaatttttgatgagctaattcata |
26837809 |
T |
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| Q |
214 |
aacaaatatataaatattttggtgcatacgatgcatatactaacgatctaatttatttttgaagatgttggcatatga |
291 |
Q |
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| T |
26837808 |
aacaaatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaagatgttggcttatga |
26837731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 7850924 - 7850981
Alignment:
| Q |
20 |
atgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtcc |
77 |
Q |
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| T |
7850924 |
atgatgttgcatgttaagaaaataaagttaagaacttaaaatggtatagtttctgtcc |
7850981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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