View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_13 (Length: 385)
Name: NF1721_low_13
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 61 - 377
Target Start/End: Complemental strand, 54859577 - 54859261
Alignment:
| Q |
61 |
ttattttctgtaataataggaaaatatatatgcaaaggttgaactcacacttgaactatatcaggagtgagagcaccagtagcggaattgtagttgaatc |
160 |
Q |
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| T |
54859577 |
ttattttctgtaataataggaaaatatatatgcaaaggatgaactcacacttgaactatatcaggagtgagagcaccagtagcggaattgtagttgaatc |
54859478 |
T |
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| Q |
161 |
gacagaagaaatcatcatcaccaacaacatcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatc |
260 |
Q |
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| T |
54859477 |
gacagaagaaatcatcatcaccaacaacatcaagcttcatgtacttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatc |
54859378 |
T |
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| Q |
261 |
aaaatgatcagatagaataagctcctttgagccatggaaatgacgccgacccttctttgtctcctccggccagtaataccaacggacacgaacgtctcgt |
360 |
Q |
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| T |
54859377 |
aaaatgatcagatagaataagctcctttgagccatggaaatgacgccgacccttctttgtctcctccggccagtaataccaacggacacgaacgtctcgt |
54859278 |
T |
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| Q |
361 |
gaatcagctttcatctc |
377 |
Q |
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| T |
54859277 |
gaatcagctttcatctc |
54859261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 100 - 293
Target Start/End: Complemental strand, 54853918 - 54853725
Alignment:
| Q |
100 |
tgaactcacacttgaactatatcaggagtgagagcaccagtagcggaattgtagttgaatcgacagaagaaatcatcatcaccaacaacatcaagcttca |
199 |
Q |
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| T |
54853918 |
tgaactcacactgcaactctatcaggattgaaagcaccagtagcagaattgtactcaaatcgacagaagaaatcatcattaccaacagcatcaagcttag |
54853819 |
T |
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| Q |
200 |
tgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgatcagatagaataagctcctttgagcc |
293 |
Q |
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| T |
54853818 |
tgtagctcttgaaaccatgaacaacacactttccttcaattgtatcagcactctgaacatcaaaatgatctgacagaaaaagctcttttgagcc |
54853725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 54859650 - 54859610
Alignment:
| Q |
19 |
tgaacattgaacaatatttaagcaagaatcaagataaagat |
59 |
Q |
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| T |
54859650 |
tgaacattgaacaatatttaagcaagaatcaagataaagat |
54859610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 38474817 - 38474728
Alignment:
| Q |
179 |
caccaacaacatcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgat |
268 |
Q |
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|||| ||||| |||||||||||||||||||||||| |||| ||| ||| || ||||| ||||| ||| |||| ||||||||| |||||| |
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| T |
38474817 |
cacctacaacttcaagcttcatgtagttcttcaaattgtgcacaaaacacttcccttcaattgtgtcagcactatgaacatcataatgat |
38474728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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