View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_14 (Length: 380)
Name: NF1721_low_14
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 187 - 366
Target Start/End: Complemental strand, 5302335 - 5302156
Alignment:
| Q |
187 |
tatataaagggtgtttgagtcttgagaagtcattgtgtattgaaaattgtaattttgagtttgagggttattttgggaatgatggaagaagctcagggta |
286 |
Q |
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| T |
5302335 |
tatataaagggtgtttgagtcttgaggagtcattgtgtattgaaaattgtaattttgggtttgagagttattttgggaatgatggaagaagctcagggta |
5302236 |
T |
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| Q |
287 |
gtagttccgataaggtgcctccttttctcaccaagacttataatatggttgaagatccttcaacagatgccattgtttct |
366 |
Q |
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| T |
5302235 |
gtagttccgataaggtgcctccttttctcactaagacttataatatggttgaagatccttcaacggatgccattgtttct |
5302156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5302520 - 5302418
Alignment:
| Q |
1 |
agtggagtagcataggaagcttatgaataaattgaccaaaaggatataattttttcttttggaacttttgactgacaataaatgaaattggtaaaacata |
100 |
Q |
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| T |
5302520 |
agtggagt-gcataggaagcttatgaataaattgaccaaaaagatataattttttcttttggaacttttgactgacaataaatgaaattggtaaaacata |
5302422 |
T |
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| Q |
101 |
actc |
104 |
Q |
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|||| |
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| T |
5302421 |
actc |
5302418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 19100656 - 19100556
Alignment:
| Q |
187 |
tatataaagggtgtttgagtcttgagaagtcattgtgtattgaaaattgtaattttgagtttgagggttattttgggaatgatggaagaagctcagggta |
286 |
Q |
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| T |
19100656 |
tatataaagggtgttttagccttgaggaatcattgtg-attggaaattgtagttttgggtttgagggttaatttgggaatcatggaagatggtcatggta |
19100558 |
T |
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| Q |
287 |
gt |
288 |
Q |
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|| |
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| T |
19100557 |
gt |
19100556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 327
Target Start/End: Original strand, 15619868 - 15620008
Alignment:
| Q |
187 |
tatataaagggtgtttgagtcttgagaagtcattgtgtattgaaaattgtaattttgagtttgagggttattttgggaatgatggaagaagctcagggta |
286 |
Q |
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||||||||||||||||||| |||| | | ||||| ||||| |||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |||| |
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| T |
15619868 |
tatataaagggtgtttgagccttgtggaatcattatgtatcgaaaattgtagatttgggtttgagggttattttgaaaatgatggaagtggctcaaggta |
15619967 |
T |
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| Q |
287 |
gtagttccgataaggtgcctccttttctcaccaagacttat |
327 |
Q |
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| T |
15619968 |
gtcatttcaatcatgtgcctccttttcttagtaagacttat |
15620008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 20681312 - 20681413
Alignment:
| Q |
187 |
tatataaagggtgtttgagtcttgagaagtcattgtgtattgaaaattgtaattttgagtttgagggttattttgggaatgatggaagaagctcagggta |
286 |
Q |
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||||||||||||||| | ||| || | ||||||||||||||||||| || ||||| || ||||||||||||| |||||||||||||| | ||| |||| |
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| T |
20681312 |
tatataaagggtgttattgccttaaggaatcattgtgtattgaaaattttagttttgggtgtgagggttatttttggaatgatggaagatggtcatggta |
20681411 |
T |
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| Q |
287 |
gt |
288 |
Q |
| |
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|| |
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|
| T |
20681412 |
gt |
20681413 |
T |
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