View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_2 (Length: 760)
Name: NF1721_low_2
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 250 - 586
Target Start/End: Complemental strand, 42934509 - 42934157
Alignment:
| Q |
250 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
349 |
Q |
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| T |
42934509 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
42934410 |
T |
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| Q |
350 |
attagttccaccataaaaactttcta----------------cttctattagtggatttcattcagcacatgttatatccaaacatacataatcaagtac |
433 |
Q |
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| T |
42934409 |
attagttccaccataaaaactttctagttctaaaaggtataacttctattagttgatttcattcagcacatgttatatccaaacatacataatcaagtac |
42934310 |
T |
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| Q |
434 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
533 |
Q |
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| T |
42934309 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
42934210 |
T |
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| Q |
534 |
gcaagcaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
586 |
Q |
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| T |
42934209 |
gcaagaaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
42934157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 42934766 - 42934524
Alignment:
| Q |
23 |
ctgcatattcagtagaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatc |
122 |
Q |
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| T |
42934766 |
ctgcatattcagcagaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatc |
42934667 |
T |
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| Q |
123 |
tgtgcttttgaggggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttaga |
222 |
Q |
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| T |
42934666 |
tgtgcttttgaggggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttaga |
42934567 |
T |
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| Q |
223 |
ttcaattatttgcatgacataaaagacaattaaatgtaaactt |
265 |
Q |
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| T |
42934566 |
ttccattatttgcatgacataaaagacaattaaatgtaaactt |
42934524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 584 - 743
Target Start/End: Complemental strand, 42934135 - 42933979
Alignment:
| Q |
584 |
ataattatatatagaatcaaagtggttaattcaaccaaagaaacacaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
683 |
Q |
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| T |
42934135 |
ataattatatatagaatcaatgtgattaattcaaccaaagaaactcaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
42934036 |
T |
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| Q |
684 |
taacaaacctggtgccccggatcaatactacttctgctgttggtatccaaagaattcatt |
743 |
Q |
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| T |
42934035 |
taacaaacctggtgccccggatcaatacta---ctgctgttggtatccaaagaattcatt |
42933979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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