View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_20 (Length: 325)
Name: NF1721_low_20
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 38505218 - 38504911
Alignment:
| Q |
1 |
caaaaaggaaaggaaattaacacggaaagaataacaagcaaacatcagtaatttgggaaataacatggaaagaagaaggcattcattattcttgggagat |
100 |
Q |
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| T |
38505218 |
caaaaaggaaaggaaattaacacggaaagaataacaagcaaacatcagtaatttgagaaataacatggaaagaagaaggcattcgttattcttgggagga |
38505119 |
T |
|
| Q |
101 |
tttacttctctttcaaatttattacctggaccagttgttttctactcaacagttaagatggagcagaagaagaatgaaattaattcgaagaccaagatac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38505118 |
tttacttctctttcaaatttattacctggaccggttgttttctactcaacagttaagatggagcagaagaagaatgaaattaattcgaagaccaagatac |
38505019 |
T |
|
| Q |
201 |
aaacctaatgtatataccaactcagctaaatccaacatgcagttttttgatggacaacaaccta--------tttttgttggatagtagtgcatatgaat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38505018 |
aaacctaatgtatataccaactcagctaaatccaacatgcagttttttgatggacaacaacctattttagtatttttgttggatagtagtgcatatgaat |
38504919 |
T |
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| Q |
293 |
aagtatat |
300 |
Q |
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|||||||| |
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| T |
38504918 |
aagtatat |
38504911 |
T |
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