View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_22 (Length: 296)
Name: NF1721_low_22
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 18238035 - 18237755
Alignment:
| Q |
1 |
tgtttttgtgtcgcaagaaatccttcccaatcatttttat--gtctcttaaatatgttgatgtgttgtacttgttcctttatcttcctgagttaatcaat |
98 |
Q |
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| T |
18238035 |
tgtttttgtgtcacaagaaatccttcccaatcatttttatatgtctcttaaatatgttgatgtgttgtacttgttcctttatcttactgagttaatcaat |
18237936 |
T |
|
| Q |
99 |
ggaccttagcccactaaatatatcatgttttcccccaattaaacctttcattacctttatttagctttacatgctatagaaaggcaataacagcaaaata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18237935 |
ggaccttagcccactaaatatatcatgttttcccccaattaaacctttcattacctttatttagctttacat-ctatagaaaggcaataacagcaaaata |
18237837 |
T |
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| Q |
199 |
tagataatattattaaacaatgtcttagtcatataggagataaacaccaaagggcatacaacatatttacacattaatagat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18237836 |
tagataatattattaaacaatgtcttagtcatataggagataaacaccaaagggcatacaacatatttacacattaatagat |
18237755 |
T |
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