View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_28 (Length: 275)
Name: NF1721_low_28
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 53 - 260
Target Start/End: Original strand, 11177580 - 11177790
Alignment:
| Q |
53 |
atgttgaaaattatgaggatg---attataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
149 |
Q |
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| T |
11177580 |
atgttgaaaattatgaggatgatgattataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
11177679 |
T |
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| Q |
150 |
atgtttgtaagaagggatgtttaacgtaggattggggttaaatgttgtattgttgttcttaatcttgagagcgagagaaatctctctttatcttgtagtt |
249 |
Q |
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| T |
11177680 |
atgtttgtaagaagggatgtttaacataggattggggttaaatgttgtattgttgttcttaatcttgagagcgagagaaatctctcttgatcttgtagtt |
11177779 |
T |
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| Q |
250 |
gttgttttaat |
260 |
Q |
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| T |
11177780 |
gttgttttaat |
11177790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 11177492 - 11177534
Alignment:
| Q |
16 |
gctataacattagcaactagtgatgaagataaggttaatgttg |
58 |
Q |
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| T |
11177492 |
gctataacattagctactagtggtgatgataaggttaatgttg |
11177534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 4703392 - 4703298
Alignment:
| Q |
70 |
gatgattataatgggaagaggagagtgaggaa-ccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaacatgtttgtaagaag |
163 |
Q |
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| T |
4703392 |
gatgatgataatgggaagaggagaatgaggaaacccgtgaaagaaaggtcactaaaatcgttaatgtgaaatgaagctaacatgtttctaagaag |
4703298 |
T |
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