View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_3 (Length: 650)
Name: NF1721_low_3
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 163 - 634
Target Start/End: Complemental strand, 46365682 - 46365222
Alignment:
| Q |
163 |
ggaatataaaatctggatagaatgttattgaaatcttccctaatataatgatgaaacgaggttgccatgccatcaatattatactatatactcactatgc |
262 |
Q |
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| T |
46365682 |
ggaatataaaatctggatagaatgttattgaaatcttccctaatataatgatgaaacgaggttgccatgccatcaatattatactatatactcactatgc |
46365583 |
T |
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| Q |
263 |
gtagtaattatgtcatgttggatcagtaatttacagggttataccaaaatgtaatggtaggtagatagaattatggtgactgcagcttccgtaaaaatta |
362 |
Q |
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| T |
46365582 |
gtagtaattatgtcatgttggatcagtaatttacagggttatatcaaaatgtaatggtaggtagatagaattatggcgactgcagcttccgtaaaaatta |
46365483 |
T |
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| Q |
363 |
caatggatccttgtgattatcacatatccatcgtaatatcaaacataaatttaatgttgtgtttatgtgtgatatgtcaaaattcaaaagtgggatttgg |
462 |
Q |
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| T |
46365482 |
caatggatccttgtgattatcacatatccatcgtgatatca-----------aatgttgtgtttatgtgttatatgtcaaaattcaaaagtgggatttgg |
46365394 |
T |
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| Q |
463 |
gaagtcttgcattatttgctaattttaaattaatcaaattggttttcttatttattttagtggagcttatggctagccacatccttcttgaaatcacctt |
562 |
Q |
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| T |
46365393 |
gaagtcttgcattatttgctaattttaaattaatcaaattggttttcttatttattttagtggagcttatggctagccacatccttcttgaaatcacctt |
46365294 |
T |
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| Q |
563 |
ttaaattttgagactctcacaattcgagaagtcttctacataattaatgatttgccggaaagacattgaacc |
634 |
Q |
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| T |
46365293 |
ttaaattttgagactctcacaattcgagaagtcttctacataattaatgatttgccggaaagacattgaacc |
46365222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 46365784 - 46365665
Alignment:
| Q |
26 |
gggtgagaataggagggtggaaatgttaatgaataatatatggattagagaggtgtgaaacggggaagtgatatacacgtgaggggataattattgtcaa |
125 |
Q |
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||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46365784 |
gggtgagaataggtgggtggaaatgttaattaatagtatatggattagagaggtgtgaaacggggaagtgatatacacgtgagggaataattattgtcaa |
46365685 |
T |
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| Q |
126 |
gaggaatataaaatctggat |
145 |
Q |
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| T |
46365684 |
gaggaatataaaatctggat |
46365665 |
T |
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