View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1721_low_30 (Length: 265)

Name: NF1721_low_30
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1721_low_30
NF1721_low_30
[»] chr3 (37 HSPs)
chr3 (1-252)||(19333553-19333804)
chr3 (79-245)||(18103052-18103218)
chr3 (79-245)||(19436490-19436656)
chr3 (86-240)||(18143862-18144016)
chr3 (78-245)||(18115586-18115753)
chr3 (78-245)||(19380514-19380681)
chr3 (78-245)||(19461153-19461320)
chr3 (76-221)||(17727925-17728070)
chr3 (76-221)||(19029154-19029299)
chr3 (86-241)||(18164776-18164931)
chr3 (94-245)||(19351031-19351182)
chr3 (77-245)||(18015714-18015882)
chr3 (77-241)||(18146441-18146605)
chr3 (83-234)||(18022419-18022570)
chr3 (94-245)||(19413821-19413972)
chr3 (77-217)||(17949438-17949579)
chr3 (77-245)||(19399328-19399496)
chr3 (86-241)||(16676839-16676994)
chr3 (94-217)||(18108067-18108190)
chr3 (79-241)||(14896615-14896777)
chr3 (77-245)||(19375305-19375482)
chr3 (77-241)||(24493643-24493807)
chr3 (77-212)||(17941358-17941493)
chr3 (86-228)||(19392769-19392911)
chr3 (77-170)||(25462661-25462754)
chr3 (174-221)||(19436738-19436785)
chr3 (83-164)||(19419603-19419684)
chr3 (83-213)||(19424233-19424363)
chr3 (1-47)||(24493816-24493862)
chr3 (1-40)||(18102998-18103037)
chr3 (2-40)||(19413759-19413797)
chr3 (3-40)||(18164720-18164757)
chr3 (1-40)||(18143804-18143843)
chr3 (1-40)||(19350965-19351004)
chr3 (2-39)||(19436437-19436474)
chr3 (1-41)||(19461088-19461128)
chr3 (1-41)||(25462606-25462646)
[»] scaffold0640 (2 HSPs)
scaffold0640 (74-241)||(5011-5178)
scaffold0640 (1-47)||(4956-5002)
[»] chr4 (2 HSPs)
chr4 (83-245)||(15531977-15532139)
chr4 (83-213)||(2710829-2710959)
[»] chr6 (4 HSPs)
chr6 (94-245)||(2509635-2509792)
chr6 (83-245)||(13667092-13667254)
chr6 (1-40)||(13667279-13667318)
chr6 (180-245)||(2509842-2509907)
[»] scaffold2156 (2 HSPs)
scaffold2156 (74-241)||(153-319)
scaffold2156 (1-47)||(328-374)
[»] chr8 (1 HSPs)
chr8 (94-240)||(8459107-8459253)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 19333553 - 19333804
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatccctcctcaacaaatttgtcgatttagnnnnnnngaaaactctgcacatggatagtcttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  19333553 catcacacattcatctaaacttgtataccttgacttatccctcctcaacaaatttgtcgatttagaaaaaaagaaaactctgcacatggatagtcttcat 19333652  T
Q  101 tggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcacttccttcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19333653 tggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcacttccttcac 19333752  T
Q  201 tattagaattacagttgagtgattgtaaattgaacaacttcccatttgatga 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19333753 tattagaattacagttgagtgattgtaaattgaacaacttcccatttgatga 19333804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 18103052 - 18103218
Alignment:
Q  79 tctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaa 178  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||   |||||||||| |||||||||||| | |||||||    
T  18103052 tctgcacatggatagtcttcactggctttctccactttcttccttaaaatatctcaaccttagttggattgatcttcataaggaaaccaactggtttcaa 18103151  T
Q  179 atagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
     |||| | | ||||||||||| | |||||||||||||||||| |||||||  |||||||||||||||    
T  18103152 gtagtaagtacacttccttcattgttagaattacagttgagttattgtaacctgaacaacttcccat 18103218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 19436490 - 19436656
Alignment:
Q  79 tctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaa 178  Q
    |||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||| | | |||||||||| |||||||||||| | |||||||    
T  19436490 tctgcacatgaataatcttgattggctttcttccctttcttccttaaaatatctcaaccttactgaaattgatcttcataaggaaaccaactggtttcaa 19436589  T
Q  179 atagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
      ||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||| |||||||    
T  19436590 gcagtgaattcactttcttcactattagaattacagttgcgtgaatgtaacttgaacaaattcccat 19436656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 18143862 - 18144016
Alignment:
Q  86 atggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtga 185  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |||   |||||||||| |||||||||||||| | ||||||||||||    
T  18143862 atggataatcttgattggctttctccactttcttccttaaaatatctcaacctcagtggaattgatcttcataaggaaaccaattggcttcaaatagtga 18143961  T
Q  186 attcacttccttcactattagaattacagttgagtgattgtaaattgaacaactt 240  Q
    || ||||||||||||||||||||||||||||||||  ||||||  ||||||||||    
T  18143962 atacacttccttcactattagaattacagttgagttcttgtaacctgaacaactt 18144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 18115586 - 18115753
Alignment:
Q  78 ctctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttca 177  Q
    |||| |||||||||| ||||  |||||||||| ||| ||||||||| ||||||||| ||||||||   ||| |||||| |||||||||||||| | ||||    
T  18115586 ctcttcacatggataatcttggttggctttctccacattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttca 18115685  T
Q  178 aatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  18115686 aatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttcccat 18115753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 19380514 - 19380681
Alignment:
Q  78 ctctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttca 177  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||   |   ||| |||||| ||||||||  |||| ||||||    
T  19380514 ctctgcacatggataatcttgattggctttctccactttcttccttaaaatatctcaacctcgatggaatttatcttcataaggaaaataattggtttca 19380613  T
Q  178 aatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    | |||||||| |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  19380614 agtagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttcccat 19380681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 19461153 - 19461320
Alignment:
Q  78 ctctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttca 177  Q
    |||| |||||||||| ||||  |||||||||| ||| ||||||||| ||||||||| ||||||||   ||| |||||| |||||||||||||| | ||||    
T  19461153 ctcttcacatggataatcttggttggctttctccacattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttca 19461252  T
Q  178 aatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||  ||||||| |||||||    
T  19461253 aatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaatttcccat 19461320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 17728070 - 17727925
Alignment:
Q  76 aactctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgttt 175  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |   |||||||||| ||||||||| |||| | ||    
T  17728070 aactctgcacatggatagtcttcattggctttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaacaaattggctt 17727971  T
Q  176 caaatagtgaattcacttccttcactattagaattacagttgagtg 221  Q
    ||| || ||||| ||||||||||||| |||||||||||||||||||    
T  17727970 caagtattgaatacacttccttcactgttagaattacagttgagtg 17727925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 19029299 - 19029154
Alignment:
Q  76 aactctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgttt 175  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |   |||||||||| ||||||||| |||| | ||    
T  19029299 aactctgcacatggatagtcttcattggctttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaacaaattggctt 19029200  T
Q  176 caaatagtgaattcacttccttcactattagaattacagttgagtg 221  Q
    ||| || ||||| ||||||||||||| |||||||||||||||||||    
T  19029199 caagtattgaatacacttccttcactgttagaattacagttgagtg 19029154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 18164776 - 18164931
Alignment:
Q  86 atggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtga 185  Q
    ||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||   |||||||||| |||||||||||||| | |||||  |||||    
T  18164776 atggataatcttgattggctttctccactttcttccttgaaatatctcaaccttagttttattgatcttcataaggaaaccaattggattcaagcagtga 18164875  T
Q  186 attcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc 241  Q
     | |||||||||||||||||||||||||||||||| |||| ||  |||||||||||    
T  18164876 gtacacttccttcactattagaattacagttgagtaattgcaacctgaacaacttc 18164931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 19351031 - 19351182
Alignment:
Q  94 tcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcactt 193  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||  ||   |||||||||| |||||||||||||| | ||||||||||||||||||||    
T  19351031 tcttgattggctttctccactttcttccataaaatatctcaacctcggtggaattgatcttcataaggaaaccaattggcttcaaatagtgaattcactt 19351130  T
Q  194 ccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    |||||||| ||| ||||||||||| |||| |||||  |||||||||||||||    
T  19351131 ccttcactgttaaaattacagttgggtgaatgtaacctgaacaacttcccat 19351182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 18015714 - 18015882
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttc 176  Q
    ||||| |||||||||| |||  ||||||||||  ||| ||| || || ||||||||||||||||||   |||||||||| |||||||||||||| | |||    
T  18015714 actcttcacatggataatctggattggctttcaccacattcgtcgttgaaatatctcaaccttagttggattgatcttcataaggaaaccaattggcttc 18015813  T
Q  177 aaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  || ||  |||||||||||||||    
T  18015814 aaatagtgaattcacttccttcactattagaattagagttgagtgggtgcaacctgaacaacttcccat 18015882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 18146441 - 18146605
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttc 176  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||  ||||||| | ||||||||||  ||||||||||| | |||||    
T  18146441 actctgcacatgcataatcttcattggctttctccactttcttccttgaaatatctctcccttagtgagattgatcttcacaaggaaaccaactggtttc 18146540  T
Q  177 aaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc 241  Q
    || |||| ||||||||||||||||||||| ||||| |||||  | |||||||  |||||||||||    
T  18146541 aagtagtaaattcacttccttcactattaaaattaaagttgtttaattgtaacctgaacaacttc 18146605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 18022419 - 18022570
Alignment:
Q  83 cacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatag 182  Q
    ||||| |||| |||| | ||||||||||||||||||||||| ||||||||| |||| |||    ||||||||| |||||||||||| | ||||||| ||     
T  18022419 cacatagataatcttgactggctttcttcactttcttccttgaaatatctcgacctcagtggacttgatcttcataaggaaaccaactggtttcaagtaa 18022518  T
Q  183 tgaattcacttccttcactattagaattacagttgagtgattgtaaattgaa 234  Q
    | ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  18022519 tcaattcacttccttcactattacaattacagttgagcgattgtaaattgaa 18022570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 19413821 - 19413972
Alignment:
Q  94 tcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcactt 193  Q
    |||||||||||||| | |||||||||| || |||||||||| |||||||   |||||||||| |||||||||||||| |  ||||||||||||| |||||    
T  19413821 tcttcattggctttatccactttcttcgttgaaatatctcacccttagttggattgatcttcataaggaaaccaattggcctcaaatagtgaatacactt 19413920  T
Q  194 ccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    ||||||||||||||||||||| ||||| |||||||  | || ||||||||||    
T  19413921 ccttcactattagaattacagatgagtcattgtaacctaaataacttcccat 19413972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 17949438 - 17949579
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttc-ctaaggaaaccaatttgttt 175  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||  ||   ||||||||||  ||||||||  |||| ||||    
T  17949438 actctgcacatggataatcttcattggctttctccactttcttccttaaattatctcaacctcggtggaattgatcttcaataaggaaaataattggttt 17949537  T
Q  176 caaatagtgaattcacttccttcactattagaattacagttg 217  Q
    ||| |||||||||||||| ||||||||||||||||| |||||    
T  17949538 caagtagtgaattcactttcttcactattagaattaaagttg 17949579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 19399328 - 19399496
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttc 176  Q
    |||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| |   |||||||||| |||||||||||| | |||||    
T  19399328 actctgcaaatggataatcttgattggctttctccactttcttccttaaaatatctcaaccttaattggattgatcttcataaggaaaccaactggtttc 19399427  T
Q  177 aaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    || |||| | | ||||||| ||| | || ||||||||||||||||  |||||  |||||||||| ||||    
T  19399428 aagtagtaagtacacttccgtcattgtttgaattacagttgagtgcatgtaacctgaacaactttccat 19399496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 16676839 - 16676994
Alignment:
Q  86 atggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtga 185  Q
    ||||||| |||||||||||||| |  |||||||||||| || |||||| ||||||||    ||||||||| |||||||||||||| | |||| | |||||    
T  16676839 atggataatcttcattggctttttatactttcttccttgaagtatctcgaccttagtggacttgatcttcataaggaaaccaattggattcagaaagtga 16676938  T
Q  186 attcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc 241  Q
    || |||||||||||||||||||||| | |||||||  |||||||||||||||||||    
T  16676939 atacacttccttcactattagaattgcggttgagttcttgtaaattgaacaacttc 16676994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 18108067 - 18108190
Alignment:
Q  94 tcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcactt 193  Q
    |||||||||||||||||||| ||||||||| |||||||||| |||| ||    ||||||||| |||||||||||| | ||||||| ||||||||||||||    
T  18108067 tcttcattggctttcttcacattcttccttgaaatatctcagccttggtggagttgatcttcataaggaaaccaactggtttcaagtagtgaattcactt 18108166  T
Q  194 ccttcactattagaattacagttg 217  Q
     |||||||||||||||||||||||    
T  18108167 tcttcactattagaattacagttg 18108190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 14896777 - 14896615
Alignment:
Q  79 tctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaa 178  Q
    |||||||||||||| |||| ||||||||||| ||| ||||||||| |||||||||| |||||||   ||||||||||  |||||| |||||| | |||||    
T  14896777 tctgcacatggataatcttgattggctttctccacattcttccttgaaatatctcatccttagtggaattgatcttcacaaggaatccaattggcttcaa 14896678  T
Q  179 atagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc 241  Q
     |||||| | ||||||| |||||||||||| |||| |||| |||||| ||| |||||||||||    
T  14896677 gtagtgagtacacttccctcactattagaactacaattgactgattgcaaactgaacaacttc 14896615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 19375305 - 19375482
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacat---------tgatcttcctaaggaaacca 167  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||  ||    |         |||||||| ||||| |||||    
T  19375305 actctgcacatggataatcttcaatggctttcttcactttcttccttgaaatatctcaacctcggtggagtctttggagttgatcttcataaggtaacca 19375404  T
Q  168 atttgtttcaaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    ||| |||| || |||||| ||||||||||||||||||||||||||||||||||   |||||  |||||||||| ||||    
T  19375405 attggtttgaagtagtgacttcacttccttcactattagaattacagttgagtcggtgtaacctgaacaactttccat 19375482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 24493807 - 24493643
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttc 176  Q
    ||||| |||||||||| ||||||||||||| || |||||||||| || ||||||||||||||||||   || ||||||| | |||||||||||| | |||    
T  24493807 actcttcacatggataatcttcattggcttcctccactttcttcgttgaaatatctcaaccttagtggaatcgatcttcgtgaggaaaccaattggcttc 24493708  T
Q  177 aaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc 241  Q
    ||  ||||  | ||||||||||||||||||||||||   ||| |||||||||  | |||||||||    
T  24493707 aagaagtggctacacttccttcactattagaattacgtatgattgattgtaacctaaacaacttc 24493643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 17941358 - 17941493
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttc 176  Q
    ||||| |||||||||| |||||||||||||||| || ||||| |||| |||||||||  |||||||  ||||||||||| | ||||||| |||| | |||    
T  17941358 actcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttc 17941457  T
Q  177 aaatagtgaattcacttccttcactattagaattac 212  Q
    ||  ||||||| ||||||||||||||||||| ||||    
T  17941458 aagcagtgaatacacttccttcactattagagttac 17941493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 19392769 - 19392911
Alignment:
Q  86 atggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtga 185  Q
    |||||||||||| ||||||||||| |||||||||| || |||||||||  ||| |||   |||||||||| |||||||||||||| | |||||  |||||    
T  19392769 atggatagtcttgattggctttctccactttcttcattgaaatatctcttcctaagtggaattgatcttcataaggaaaccaattggcttcaagcagtga 19392868  T
Q  186 attcacttccttcactattagaattacagttgagtgattgtaa 228  Q
     |  |||| ||||||| ||||||||||| || ||||| |||||    
T  19392869 gtatactttcttcactgttagaattacaattaagtgaatgtaa 19392911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 25462661 - 25462754
Alignment:
Q  77 actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatt 170  Q
    ||||| |||||||||| |||||||||||||||| || | ||||||||||||||||||||||| | |   |||||||||| ||||||||| ||||    
T  25462661 actcttcacatggataatcttcattggctttctccattatcttccttaaaatatctcaacctcaatgcaattgatcttcataaggaaactaatt 25462754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 19436738 - 19436785
Alignment:
Q  174 ttcaaatagtgaattcacttccttcactattagaattacagttgagtg 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19436738 ttcaaatagtgaattcacttccttcactattagaattaaagttgagtg 19436785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 19419603 - 19419684
Alignment:
Q  83 cacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaa 164  Q
    |||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||  ||   |||||||||| ||||||||    
T  19419603 cacatgtataatcttgattggctttctccactttcttccttaaaatatctcaacctcggtggaattgatcttcataaggaaa 19419684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 19424233 - 19424363
Alignment:
Q  83 cacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatag 182  Q
    |||||||||| |||| |||||||||||||||||||||| ||  |  ||||  ||||||||   ||||||||| |||| |||| ||||| | |||||  ||    
T  19424233 cacatggataatcttgattggctttcttcactttcttcgttggagaatctttaccttagtggaattgatctttctaaagaaagcaattggattcaaggag 19424332  T
Q  183 tgaattcacttccttcactattagaattaca 213  Q
    | | | ||||||||||||||||| |||||||    
T  19424333 tcagtacacttccttcactattacaattaca 19424363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24493862 - 24493816
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatccctcctca 47  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||    
T  24493862 catcacacattcatctaaacttgtctaccttgacttatcccccctca 24493816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18102998 - 18103037
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatcc 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  18102998 catcacacattcatctaaacttgtctaccttgacttatcc 18103037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 19413759 - 19413797
Alignment:
Q  2 atcacacattcatctaaacttgtataccttgacttatcc 40  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19413759 atcacacattcatctaaacttgtttaccttgacttatcc 19413797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 18164720 - 18164757
Alignment:
Q  3 tcacacattcatctaaacttgtataccttgacttatcc 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  18164720 tcacacattcatctaaacttgtctaccttgacttatcc 18164757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18143804 - 18143843
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatcc 40  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  18143804 catcacacattcctctaaacttgtctaccttgacttatcc 18143843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19350965 - 19351004
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatcc 40  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  19350965 catcacacattcctctaaacttgtctaccttgacttatcc 19351004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 19436437 - 19436474
Alignment:
Q  2 atcacacattcatctaaacttgtataccttgacttatc 39  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  19436437 atcacacattcatctaaacttctctaccttgacttatc 19436474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19461088 - 19461128
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatccc 41  Q
    |||||||||||||||||| ||| | ||||||||||||||||    
T  19461088 catcacacattcatctaaccttttctaccttgacttatccc 19461128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25462606 - 25462646
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatccc 41  Q
    |||||||||||||||||||||||  || |||||||||||||    
T  25462606 catcacacattcatctaaacttgactatcttgacttatccc 25462646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 241
Target Start/End: Original strand, 5011 - 5178
Alignment:
Q  74 aaaactctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgt 173  Q
    |||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||   |||||||||| |||||||||||| | |     
T  5011 aaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaactggc 5110  T
Q  174 ttcaaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc 241  Q
    |||||  ||| | | | |||||||||||||||||||||||  ||||| | |||||| | |||||||||    
T  5111 ttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaaactaaacaacttc 5178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4956 - 5002
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatccctcctca 47  Q
    |||||||| ||||||||||||||| |||||||||||| ||| |||||    
T  4956 catcacacgttcatctaaacttgtctaccttgacttagcccccctca 5002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 15531977 - 15532139
Alignment:
Q  83 cacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatag 182  Q
    |||||||||| |||| ||||||||||| ||||||| ||||| |||||||||||||||| |   |||||||||| |||||||||||| | | |||||  ||    
T  15531977 cacatggataatcttgattggctttctccactttcatccttgaaatatctcaaccttaattggattgatcttcataaggaaaccaactggattcaagcag 15532076  T
Q  183 tgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
     || | ||||||||||||||||||| |||  ||||||||| |||||| |||||||||||||||    
T  15532077 agagtacacttccttcactattagatttaaggttgagtgactgtaaactgaacaacttcccat 15532139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 2710959 - 2710829
Alignment:
Q  83 cacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatag 182  Q
    ||||| |||| |||| ||||||||||| |||||||||| || |||||||||||||| ||    |||||||||| ||| |||||||||| | |||||||||    
T  2710959 cacatagataatcttaattggctttctccactttcttctttgaaatatctcaacctcagcggtattgatcttcataaagaaaccaattggcttcaaatag 2710860  T
Q  183 tgaattcacttccttcactattagaattaca 213  Q
    ||||| |||||||||||||||||||| ||||    
T  2710859 tgaatacacttccttcactattagaagtaca 2710829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 2509635 - 2509792
Alignment:
Q  94 tcttcattggctttcttcactttcttccttaaaatatctcaacctt------agtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaat 187  Q
    |||||||||||||||| |||||||||||||||||||||||||||||      |||| ||||||||||| |||| ||||||||| | | ||| |||||| |    
T  2509635 tcttcattggctttctccactttcttccttaaaatatctcaaccttggtttcagtaccattgatcttcataagaaaaccaattgggtacaagtagtgagt 2509734  T
Q  188 tcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
     ||||||||||||||||||| |||  ||||| ||| | ||| ||||||||||||||||    
T  2509735 acacttccttcactattagagttaaggttgaatgactataacttgaacaacttcccat 2509792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 13667254 - 13667092
Alignment:
Q  83 cacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatag 182  Q
    ||||| |||| |||||||||| ||||| || |||||||||| |||||||||    ||| |  ||||||||||| ||||||||| |||| | | ||| |||    
T  13667254 cacattgataatcttcattggttttctccattttcttccttgaaatatctccggtttaatggcattgatcttcataaggaaactaattggctccaagtag 13667155  T
Q  183 tgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    ||||| |||||||||||| ||||||||||| |||||| | ||||||  |||||||||||||||    
T  13667154 tgaatacacttccttcacaattagaattacggttgagaggttgtaacctgaacaacttcccat 13667092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13667318 - 13667279
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatcc 40  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  13667318 catcacaaattcatctaaacttgtctaccttgacttatcc 13667279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 2509842 - 2509907
Alignment:
Q  180 tagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccat 245  Q
    |||||| | ||||||||||||||||||| |||  ||||| ||| | ||| ||||||||||||||||    
T  2509842 tagtgagtacacttccttcactattagagttaaggttgaatgactataacttgaacaacttcccat 2509907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 319 - 153
Alignment:
Q  74 aaaactctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgt 173  Q
    |||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||| |   |||||||||| |||||||||||| | |     
T  319 aaaactcttcacatggataatcttcattggctttcttcactttcatcctt-aaatatctcatccttattgggattgatcttcgtaaggaaaccaactggc 221  T
Q  174 ttcaaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc 241  Q
    |||||  ||| | | |  ||||||||||||||||||||||  ||||| | |||||| | |||||||||    
T  220 ttcaagcagtaagtacctttccttcactattagaattacaactgagttactgtaaactaaacaacttc 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 374 - 328
Alignment:
Q  1 catcacacattcatctaaacttgtataccttgacttatccctcctca 47  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||    
T  374 catcacacgttcatctaaacttgtctaccttgacttatcccccctca 328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 8459107 - 8459253
Alignment:
Q  94 tcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcactt 193  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||| | |   |||||||||| ||||||||| |||| | |||||  ||||  | |||||    
T  8459107 tcttcaatggctttctccactttcttccttaaaaaatctcaacctcaatggaattgatcttcataaggaaactaattggcttcaagcagtggctacactt 8459206  T
Q  194 ccttcactattagaattacagttgagtgattgtaaattgaacaactt 240  Q
     |||| |||||||| ||||| || ||| | |||||| ||||||||||    
T  8459207 tcttccctattagagttacacttaagtaagtgtaaactgaacaactt 8459253  T

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