View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_31 (Length: 264)
Name: NF1721_low_31
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_31 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 38504694 - 38504498
Alignment:
| Q |
68 |
caaactggacggttcaactgactgaactgtgcaccggcactgctatggttcagttatatgagggttcaaccgcgcttcaatcccggttcaaacagtttaa |
167 |
Q |
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| T |
38504694 |
caaactggacggttcaactgactgaactgtgcaccggcactgctatgattcagttatatgagggttcaaccgcgcttcaatcccggttcaaacagtttaa |
38504595 |
T |
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| Q |
168 |
agcagttgaaccatgacccagagatttccaatttgatgtccggtttggtttctaaaacattggtttagatgacccaataatattaacaggcattaac |
264 |
Q |
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| T |
38504594 |
agcagttgaaccatgacccagagatttccaatttgatgtccggtttggtttctaaaacattggtttagatgacccaataatattaacaggcattaac |
38504498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 38504730 - 38504695
Alignment:
| Q |
10 |
aatattcaaagtgttctatctgatgtgataaagggt |
45 |
Q |
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| T |
38504730 |
aatattcaaagtgttctatctgatgtgataaagggt |
38504695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 2579759 - 2579717
Alignment:
| Q |
52 |
tcaatgttttaaaaaccaaactggacggttcaactgactgaac |
94 |
Q |
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| T |
2579759 |
tcaatgttttaaaaaccaatctggacggatcaactgattgaac |
2579717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 4536421 - 4536449
Alignment:
| Q |
161 |
agtttaaagcagttgaaccatgacccaga |
189 |
Q |
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| T |
4536421 |
agtttaaagcagttgaaccatgacccaga |
4536449 |
T |
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