View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_32 (Length: 263)
Name: NF1721_low_32
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 10601503 - 10601322
Alignment:
| Q |
68 |
gcagaaccaacagagtgttcttcatcactctcatcagaatcatccaaatctacnnnnnnn-tatctttatcagcagactcatcgcttgctccactttttt |
166 |
Q |
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| T |
10601503 |
gcagaaccaacagagtgttcttcatcactctcatcagaatcatccaaatctacaaaaaaaatatctttatcagcagactcatcgcttgctccactttttt |
10601404 |
T |
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| Q |
167 |
ctccctgtttaacattatcataattttcttcttcttcatcatcattagaatcagaactaacagagtgttcgtcatctgattg |
248 |
Q |
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| T |
10601403 |
ctccctgtttaacattatcataattttcttcttcttcatcatcattagaatcagaactaacagagtgttcgtcatctgattg |
10601322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 10601655 - 10601548
Alignment:
| Q |
81 |
agtgttcttcatcactctcatcagaatcatccaaatctac-nnnnnnntatctttatcagcagactcatcgcttgctccacttttttctccctgtttaac |
179 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | ||| ||||||||||| | |||| || ||| |
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| T |
10601655 |
agtgttcttcatcactctcatcagaatcatccaaatcaacaaaaaaattatctttatcagcaaactcaccacttcctccactttttgcaccctcttgaac |
10601556 |
T |
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| Q |
180 |
attatcat |
187 |
Q |
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|||||||| |
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| T |
10601555 |
attatcat |
10601548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 17008511 - 17008539
Alignment:
| Q |
72 |
aaccaacagagtgttcttcatcactctca |
100 |
Q |
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| T |
17008511 |
aaccaacagagtgttcttcatcactctca |
17008539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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