View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1721_low_36 (Length: 250)

Name: NF1721_low_36
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1721_low_36
NF1721_low_36
[»] chr5 (3 HSPs)
chr5 (13-250)||(43310427-43310664)
chr5 (160-250)||(14299291-14299381)
chr5 (158-231)||(3738140-3738213)
[»] chr4 (3 HSPs)
chr4 (159-250)||(32818403-32818494)
chr4 (160-246)||(9134575-9134661)
chr4 (166-215)||(56013819-56013868)
[»] chr8 (3 HSPs)
chr8 (158-239)||(16972096-16972177)
chr8 (160-250)||(463147-463237)
chr8 (160-236)||(11572492-11572568)
[»] chr7 (2 HSPs)
chr7 (160-239)||(27571834-27571913)
chr7 (163-250)||(45004981-45005068)
[»] chr1 (8 HSPs)
chr1 (160-248)||(26373575-26373667)
chr1 (157-250)||(28083919-28084012)
chr1 (157-201)||(10324969-10325013)
chr1 (160-250)||(47892422-47892512)
chr1 (157-250)||(3016124-3016216)
chr1 (157-201)||(3515828-3515872)
chr1 (157-201)||(7524123-7524167)
chr1 (157-201)||(33693031-33693075)
[»] chr6 (4 HSPs)
chr6 (157-248)||(8854881-8854974)
chr6 (160-237)||(1485180-1485257)
chr6 (157-201)||(852542-852586)
chr6 (157-201)||(30926809-30926853)
[»] chr3 (2 HSPs)
chr3 (160-236)||(36302158-36302234)
chr3 (177-250)||(41115413-41115486)
[»] chr2 (3 HSPs)
chr2 (160-250)||(10618975-10619065)
chr2 (159-236)||(22535973-22536050)
chr2 (157-201)||(42982554-42982598)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 43310427 - 43310664
Alignment:
Q  13 attctctacattttgtgttacagtatactacctcatttcaaaatgaaacaaattaatatatttcaacctcaagcccgcaacaccatgcatctgatgcatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43310427 attctctacattttgtgttacagtatactacctcatttcaaaatgaaacaaattaatatatttcaacctcaagcccgcaacaccatgcatctgatgcatt 43310526  T
Q  113 gttggttttgatcttgtataacccctcacgattttgtcctttgagtaaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaat 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  43310527 gttggtttcgatcttgtataacccctcacgattttgtcctttgagtaaaaatcaattctataatcaaaagctacaatttctatcttcaaataacaacaat 43310626  T
Q  213 tctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43310627 tctaaaagtaaaatcaattctactcgaaaacaaccaaa 43310664  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 14299381 - 14299291
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    |||| |||||||| ||| ||||||||||| | ||| |||||| ||| | ||||| |||||| |||||||||| || |||||||||||||||    
T  14299381 aaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaattttaaaagcaaaatcaattttattcgaaaacaaccaaa 14299291  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 3738140 - 3738213
Alignment:
Q  158 taaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaatt 231  Q
    |||||||||||| || ||||||||||||||| ||||| |||||| ||| | ||||| ||||  |||||||||||    
T  3738140 taaaaatcaattatagaatcaaaaactacaacttctaacttcaactagaatcaattttaaagttaaaatcaatt 3738213  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 32818403 - 32818494
Alignment:
Q  159 aaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    |||||||||||||| |||||||| |||||| ||||| |||||||||| | |||||||  | | ||||||||||||||||||||  |||||||    
T  32818403 aaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaattctactcgaaagaaaccaaa 32818494  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 9134661 - 9134575
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaac 246  Q
    ||||||||||||| |||||||| |||||| || || |||||| ||| | |||||||  ||||||||||||||| |||||| ||||||    
T  9134661 aaaatcaattctaaaatcaaaagctacaaattttagcttcaagtaggatcaattctggaagtaaaatcaattccactcgataacaac 9134575  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 56013819 - 56013868
Alignment:
Q  166 aattctataatcaaaaactacaatttctatcttcaaatagcaacaattct 215  Q
    ||||||| |||||||||||| || ||||||||| |||||| |||||||||    
T  56013819 aattctagaatcaaaaactaaaaattctatctttaaatagaaacaattct 56013868  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 16972096 - 16972177
Alignment:
Q  158 taaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcga 239  Q
    ||||||||||||||| ||| ||||||||||| ||||| |||||||||  | ||| ||| || | ||||||||||||||||||    
T  16972096 taaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaatcaactctgaaggcaaaatcaattctactcga 16972177  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 463147 - 463237
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    ||||| ||||||| ||||| ||||||||| |  ||  ||||||||| |  ||||||||||  ||||||||||||||| || ||||||||||    
T  463147 aaaataaattctagaatcataaactacaaatcttagtttcaaatagaattaattctaaaaacaaaatcaattctactagacaacaaccaaa 463237  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 11572492 - 11572568
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctact 236  Q
    |||||||||| ||||||||||| |||||| || || |||||| ||  | ||||| |  |||||||||||||||||||    
T  11572492 aaaatcaattttataatcaaaatctacaaattttagcttcaagtataatcaattatgtaagtaaaatcaattctact 11572568  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 27571913 - 27571834
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcga 239  Q
    ||||||||||||| |||||||| || ||||||||| |||||| ||| | |||||||  | |||||||||||| |||||||    
T  27571913 aaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaattcttgaggtaaaatcaattatactcga 27571834  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 45005068 - 45004981
Alignment:
Q  163 atcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    ||||||||||||||||||  || |||||| || |||||| ||| | ||||||| || | ||||||||||||| |||| | ||||||||    
T  45005068 atcaattctataatcaaagcctccaatttttagcttcaagtagaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaa 45004981  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 26373575 - 26373667
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttc----tatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaacca 248  Q
    ||||||||||||| |||||||| |||||| |||    || |||||| ||| | ||||| ||||| ||||||||||||||||| ||||||||||    
T  26373575 aaaatcaattctagaatcaaaagctacaagttcaagctaacttcaagtagaatcaattttaaaaataaaatcaattctactcaaaaacaacca 26373667  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 28083919 - 28084012
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    |||||||| |||| || |||||||| |||||| ||||| |||||| ||| | |||||   ||   |||||||||||||||||||||||||||||    
T  28083919 gtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaa 28084012  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 10324969 - 10325013
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaa 201  Q
    ||||||||||||| || |||||||| |||||||||||||||||||    
T  10324969 gtaaaaatcaattatagaatcaaaagctacaatttctatcttcaa 10325013  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 47892422 - 47892512
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    ||||||||||||| |||||||| || ||||||||| ||| || ||| | || |||||   | |||||||||||||||| ||| ||||||||    
T  47892422 aaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatcagttctaggtgaaaaatcaattctactcaaaagcaaccaaa 47892512  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 3016216 - 3016124
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    ||||| |||||||||| |||||||| |||||| |||||  ||||| ||| | ||||| |||| | ||||||||||||| |  ||||||||||||    
T  3016216 gtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatcaattataaa-gcaaaatcaattctattaaaaaacaaccaaa 3016124  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 3515872 - 3515828
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaa 201  Q
    |||||||||||||||| ||| |||| |||||||||||| ||||||    
T  3515872 gtaaaaatcaattctagaatgaaaagctacaatttctagcttcaa 3515828  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 7524167 - 7524123
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaa 201  Q
    ||||||||||||||||||||||||| |||||| | ||| ||||||    
T  7524167 gtaaaaatcaattctataatcaaaagctacaaatcctaacttcaa 7524123  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 33693075 - 33693031
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaa 201  Q
    ||||||||||||| || |||||||| |||||||||||| ||||||    
T  33693075 gtaaaaatcaattatagaatcaaaagctacaatttctagcttcaa 33693031  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 8854974 - 8854881
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatc--aattctactcgaaaacaacca 248  Q
    |||||||||||||||||| ||||||||||||| || || |||||  ||| |||||||||  | ||||||||  ||||||||| |||| ||||||    
T  8854974 gtaaaaatcaattctatagtcaaaaactacaaattgtagcttcatgtagaaacaattcttgaggtaaaatcaaaattctacttgaaagcaacca 8854881  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 1485180 - 1485257
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactc 237  Q
    ||||||||||||| |||||||| || |||||||||  ||||| ||| | |||||||||| | ||||| ||||||||||    
T  1485180 aaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaattaattctactc 1485257  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 852586 - 852542
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaa 201  Q
    |||||||||||||||| ||||| || |||||||||||| ||||||    
T  852586 gtaaaaatcaattctagaatcagaacctacaatttctagcttcaa 852542  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 30926809 - 30926853
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaa 201  Q
    |||||||||||||||| ||| ||||||| ||||||||| ||||||    
T  30926809 gtaaaaatcaattctagaataaaaaactccaatttctagcttcaa 30926853  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 36302234 - 36302158
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctact 236  Q
    ||||||||||||| |||||||| || |||| |||| |||||||||| | ||| ||| || | |||||||||||||||    
T  36302234 aaaatcaattctaaaatcaaaatctccaatctctagcttcaaatagaatcaactctgaaggcaaaatcaattctact 36302158  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 41115413 - 41115486
Alignment:
Q  177 caaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    ||||| |||||| ||||| |||||| ||| | |||||||| ||| |||||||||||||||  |||||| |||||    
T  41115413 caaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctactttaaaacatccaaa 41115486  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 10618975 - 10619065
Alignment:
Q  160 aaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctactcgaaaacaaccaaa 250  Q
    |||||||||| || |||||||| ||  |||||||| |||||| ||| | |||||||||| | ||||||||||| | | |||| ||||||||    
T  10618975 aaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatcaattcaagtggaaagcaaccaaa 10619065  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 22536050 - 22535973
Alignment:
Q  159 aaaaatcaattctataatcaaaaactacaatttctatcttcaaatagcaacaattctaaaagtaaaatcaattctact 236  Q
    |||||| ||||||| |||||||| || ||| |||||  ||||| ||| | |||||||||| | |||||||||||||||    
T  22536050 aaaaattaattctaaaatcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaatcaattctact 22535973  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 42982598 - 42982554
Alignment:
Q  157 gtaaaaatcaattctataatcaaaaactacaatttctatcttcaa 201  Q
    |||||||||||||||  |||||||| |||||||||||| ||||||    
T  42982598 gtaaaaatcaattctggaatcaaaagctacaatttctagcttcaa 42982554  T

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