View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1721_low_38 (Length: 245)

Name: NF1721_low_38
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1721_low_38
NF1721_low_38
[»] chr5 (12 HSPs)
chr5 (14-138)||(41369800-41369925)
chr5 (14-213)||(41316310-41316509)
chr5 (45-207)||(41337250-41337412)
chr5 (17-225)||(41324382-41324590)
chr5 (25-213)||(41366481-41366666)
chr5 (14-210)||(41328277-41328473)
chr5 (14-210)||(41332290-41332486)
chr5 (94-213)||(41286399-41286518)
chr5 (17-216)||(41310573-41310772)
chr5 (45-213)||(31188382-31188550)
chr5 (14-142)||(31225232-31225360)
chr5 (45-142)||(31178408-31178505)
[»] chr4 (1 HSPs)
chr4 (16-218)||(17249065-17249267)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 41369800 - 41369925
Alignment:
Q  14 agaccaaaatggaaaaacttcagagagaggc-tgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaag 112  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  41369800 agaccaaaatggaaaaacttcagagaaaggcatgatattatattgcaagatatcatcaatgatcacaaaaacaatcatagagaagaaatcaaggaagaag 41369899  T
Q  113 acctagttgatgttcttctaaagatt 138  Q
    ||||||||||||||||||||| ||||    
T  41369900 acctagttgatgttcttctaatgatt 41369925  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 41316310 - 41316509
Alignment:
Q  14 agaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaaga 113  Q
    |||||||||||||||||||||| | ||||  |||||||| ||||||||| |||||| | ||||||||||| | ||| |  ||||||| ||| || |||||    
T  41316310 agaccaaaatggaaaaacttcacaaagagcttgatatgacattgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaaga 41316409  T
Q  114 cctagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtctacaa 213  Q
     ||||| ||||||||||| ||||||||||  ||||   |||||||| |||| || || ||||||||||  |||||| || |||| |||||||||| ||||    
T  41316410 tctagtagatgttcttctcaagattcaacaggaaaattatcactcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaa 41316509  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 41337250 - 41337412
Alignment:
Q  45 tgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacga 144  Q
    ||||| |||||||||||| |||||||||||||| | ||  ||||| ||  ||  || |||||| ||||||||||||||||||||||| ||| ||||||      
T  41337250 tgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacat 41337349  T
Q  145 gaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagt 207  Q
    ||||  | ||||||| |||| |||||||||||||| |  |||||| |||||||||||||||||    
T  41337350 gaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcattcaggttagt 41337412  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 41324382 - 41324590
Alignment:
Q  17 ccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacct 116  Q
    ||||||||||||||||||| | ||||  |||||||||||||||||| || ||| | ||||||||||| | ||| |  ||||| | ||| |||||| | ||    
T  41324382 ccaaaatggaaaaacttcacaaagagattgatatgatattgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatct 41324481  T
Q  117 agttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtctacaataa 216  Q
    ||| ||||||||||| ||||||||||  ||||   |||||||| |||| || || || |||||||  |||||  || |||| |||||||||| ||||| |    
T  41324482 agtagatgttcttctcaagattcaacaggaaaattatcactcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaatca 41324581  T
Q  217 aaactgtta 225  Q
    ||| |||||    
T  41324582 aaagtgtta 41324590  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 41366481 - 41366666
Alignment:
Q  25 gaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaa----gacctagtt 120  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||| ||    | |||||| | ||||||||    || |||||     
T  41366481 gaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtc----acaagaaagctaggaagaatgatgatctagta 41366576  T
Q  121 gatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtctacaa 213  Q
    ||||||||||| ||||||||||| | ||   |||||||| |||| |||||||| || ||||  |||||| | ||||| |||||||||| ||||    
T  41366577 gatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 41328277 - 41328473
Alignment:
Q  14 agaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaaga 113  Q
    |||||||||||||||||||||| | ||||  ||||||||||   ||||| |||||| | ||||||| ||||| ||| |  |||| || ||| || |||||    
T  41328277 agaccaaaatggaaaaacttcatacagagattgatatgatagcacaagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaaga 41328376  T
Q  114 cctagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtcta 210  Q
     ||||| ||||||||||| ||||||||||  ||||   ||||||||||||| || || || |||||||  || ||| || |||| ||||||||||||    
T  41328377 tctagtagatgttcttctcaagattcaacaggaaaattatcactcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 41332290 - 41332486
Alignment:
Q  14 agaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaaga 113  Q
    ||||||||||||||||| |||| ||||||  |||||||||| ||||||| |||||| | ||||||| ||| | ||| |  |||| || ||| || |||||    
T  41332290 agaccaaaatggaaaaaattcatagagagcttgatatgataatgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaaga 41332389  T
Q  114 cctagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtcta 210  Q
     ||||| ||||||||||| ||||||||||  ||||   || |||||||||| || || || |||||||  || ||| || |||| ||||||||||||    
T  41332390 tctagtagatgttcttctcaagattcaacaggaaaattattactcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 41286399 - 41286518
Alignment:
Q  94 gaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcag 193  Q
    ||||||| ||| || ||||| ||| ||||||||||||| ||||||||||  ||||  || |||||| |||| |||||||||||||| |   |||||||||    
T  41286399 gaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacaggaaagtgagcactcataacatcccttgactgatgataatttaaaagcag 41286498  T
Q  194 tcattcaggttagtctacaa 213  Q
    |||| |||||||||||||||    
T  41286499 tcatccaggttagtctacaa 41286518  T

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Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 41310573 - 41310772
Alignment:
Q  17 ccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacct 116  Q
    |||||||||||||| |||| | ||||  | |||||||||||||||| |||||| | ||||||||||| | ||  |  ||||| | ||| || ||||| ||    
T  41310573 ccaaaatggaaaaagttcacaaagagatttatatgatattgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatct 41310672  T
Q  117 agttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtctacaataa 216  Q
    ||| ||||||||||| |||||| |||  ||||   ||||||||||||| || || || |||||||  || ||| || |||| ||||| ||||||||||||    
T  41310673 agtagatgttcttctcaagattaaacaggaaaattatcactcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaataa 41310772  T

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Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 31188550 - 31188382
Alignment:
Q  45 tgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaacga 144  Q
    |||||||||||||||||||||||||  |||||| ||||  | ||| |  ||||||| |||||| ||||| |||||||||  |||||| ||||||||||      
T  31188550 tgatatgatattgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacag 31188451  T
Q  145 gaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtctacaa 213  Q
    ||||  ||||||||| |  | || || |||||| |||  || |||||| |||||| |||| ||||||||    
T  31188450 gaaaatgatcactcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaa 31188382  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 31225232 - 31225360
Alignment:
Q  14 agaccaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaaga 113  Q
    |||||||| | ||||| ||||| | ||||  ||||||||||||||||||||||||| ||||||| ||||  | ||| |  ||||||| |||||| |||||    
T  31225232 agaccaaagttgaaaagcttcataaagagattgatatgatattgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaaga 31225331  T
Q  114 cctagttgatgttcttctaaagattcaac 142  Q
     |||||||||  |||||| ||||| ||||    
T  31225332 tctagttgatactcttctcaagatacaac 31225360  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 31178505 - 31178408
Alignment:
Q  45 tgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacctagttgatgttcttctaaagattcaac 142  Q
    |||||||||||||||||||||| || ||||||| ||||  | ||| |  ||||||| |||||| ||||| ||||||||||  ||| | ||||||||||    
T  31178505 tgatatgatattgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaac 31178408  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 17249267 - 17249065
Alignment:
Q  16 accaaaatggaaaaacttcagagagaggctgatatgatattgcaagatatcatcaatgatcacaaaagtaatcatagagaagaaatcaaggaagaagacc 115  Q
    |||||||||||||||||||| || ||   ||||||||||||||||||||||||  ||||||||| || |   || |   ||| |  |||||| ||||| |    
T  17249267 accaaaatggaaaaacttcatagggaaattgatatgatattgcaagatatcatagatgatcacagaaatggacaaaacaaagcacgcaaggatgaagatc 17249168  T
Q  116 tagttgatgttcttctaaagattcaacgagaaaccgatcactcagaacaccccttgactgatgacagaataaaagcagtcattcaggttagtctacaata 215  Q
    ||||||||| |||| | |||||||||| |||||  ||| || || || |  | |||||||||||||  |||||| || |||| ||||||||||||||| |    
T  17249167 tagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatccaggttagtctacaaga 17249068  T
Q  216 aaa 218  Q
    |||    
T  17249067 aaa 17249065  T

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