View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1721_low_46 (Length: 237)
Name: NF1721_low_46
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 3703107 - 3703212
Alignment:
| Q |
1 |
ttacatcagtattttaaaagcacacttcttaataatacttgttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703107 |
ttacatcagtattttaaaagcacacttcttaataatacttcttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatac |
3703206 |
T |
|
| Q |
101 |
acacaa |
106 |
Q |
| |
|
| |||| |
|
|
| T |
3703207 |
atacaa |
3703212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 3703386 - 3703420
Alignment:
| Q |
188 |
tcacttgcatcattccttctaccacatatgttacc |
222 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
3703386 |
tcacttgcatcattccctctaccacatatgttacc |
3703420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University