View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_5 (Length: 566)
Name: NF1721_low_5
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 44228295 - 44228013
Alignment:
| Q |
19 |
catgggcatgacaggggcaccaacataataagaagaagtgctagaaacaggatatgatgtgttatagcttaacccatagggtggtgctactgctactgct |
118 |
Q |
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| T |
44228295 |
catgggcatgacaggggcaccaacataataagaagaagtgctagaaacaggatatgatgtgttatagcttaacccatagggtggtgctactgct------ |
44228202 |
T |
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| Q |
119 |
ggaggagggtgtggatagtacatatgtggtggatatgggttataagcatgccgctgaggaagtactggaggcataataatttccttaggaatggcattca |
218 |
Q |
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| T |
44228201 |
ggaggagggtgtggatagtacatatgtggtggatatgggttataagcatgctgctgaggaagtactggaggcataataatttccttaggaatggcattca |
44228102 |
T |
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| Q |
219 |
ctttgtcaagtacttgtggtgaatcaattgtttctgtactaatgatttcttttcctcctccattatttggagttaatgaagcagaacca |
307 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44228101 |
ctttttcaagtacttgtggtgaatcaattgtttctgtactaattatttcttttcctcctccattatttggagttaatgaagcagaacca |
44228013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 343 - 559
Target Start/End: Complemental strand, 44227977 - 44227761
Alignment:
| Q |
343 |
agcaccaccctcacttttgttattatttttatcaccattattaccttctttgtgatctgaatcttcttcaccatcatcacctgcatcatctatgcaacct |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44227977 |
agcaccaccctcacttttgttattatttttatcaccattattaccttctttgtgatctgaatcttcttcaccatcatcacctgcatcatctatgcaacct |
44227878 |
T |
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| Q |
443 |
tcatgactactttcaccaatttgttcagtactattcttctgatcttccttgatctccttattaataatattttcagtttcaccctttgattttgaagatt |
542 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44227877 |
tcatgactactttcaccaatatgttcagtactattcttctgatcttccttgatctccttattaataatattttcagtttcaccctttgattttgaagatt |
44227778 |
T |
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| Q |
543 |
ttttatctttcttctca |
559 |
Q |
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||||||||||||||||| |
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| T |
44227777 |
ttttatctttcttctca |
44227761 |
T |
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