View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1721_low_50 (Length: 230)

Name: NF1721_low_50
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1721_low_50
NF1721_low_50
[»] chr1 (5 HSPs)
chr1 (1-215)||(52629215-52629429)
chr1 (1-80)||(50431294-50431371)
chr1 (26-80)||(50536077-50536131)
chr1 (22-75)||(11754123-11754175)
chr1 (22-62)||(12247675-12247714)
[»] chr7 (1 HSPs)
chr7 (2-80)||(20480208-20480286)
[»] chr2 (7 HSPs)
chr2 (1-80)||(4680350-4680429)
chr2 (6-52)||(20536711-20536757)
chr2 (1-74)||(18180626-18180699)
chr2 (1-45)||(93846-93890)
chr2 (22-75)||(1118107-1118159)
chr2 (22-75)||(18166729-18166781)
chr2 (22-62)||(35287216-35287255)
[»] chr4 (2 HSPs)
chr4 (1-44)||(31676164-31676207)
chr4 (22-75)||(52620747-52620799)
[»] scaffold1793 (1 HSPs)
scaffold1793 (22-75)||(162-214)
[»] chr8 (2 HSPs)
chr8 (22-80)||(9453444-9453502)
chr8 (22-62)||(22947634-22947673)
[»] scaffold1822 (1 HSPs)
scaffold1822 (22-71)||(370-418)
[»] chr5 (2 HSPs)
chr5 (22-75)||(28746215-28746266)
chr5 (22-74)||(2530211-2530262)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 52629215 - 52629429
Alignment:
Q  1 ctttatttttaaatctcttccttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacgcacccctattatgtcggcatttgat 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||| ||||||||    
T  52629215 ctttatttttaaagctcttccttttaactttagttttaaagtaacttttagaccctaaaaaagtcaggtcaaacgcacccatagtatgtcgacatttgat 52629314  T
Q  101 gtgatatgcacctgttatgttgcgaaccaagtaagctaaaaatacttatcatattttagcatcatgttccgccaaaatgttgtgtctccttatagaaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52629315 gtgatatgcacctgttatgttgcgaaccaagtaagctaaaaatacttaccatattttagcatcatgttccgccaaaatgttgtgtctccttatagaaaac 52629414  T
Q  201 attatgcaagggttt 215  Q
     ||||||||||||||    
T  52629415 gttatgcaagggttt 52629429  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 50431294 - 50431371
Alignment:
Q  1 ctttatttttaaatctcttccttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacgcaccc 80  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||  |||||||||||||||| |||||    
T  50431294 ctttatttttaaagctcttccttttaaatttagttttaaagtaatttttagaccct--aaaagtcaggccaaacacaccc 50431371  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 50536077 - 50536131
Alignment:
Q  26 aactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacgcaccc 80  Q
    ||||| ||||||||| | ||||||||| | ||||||||||||| |||||||||||    
T  50536077 aacttcagttttaaaatgacttttagaccttaaaaaagtcaggtcaaacgcaccc 50536131  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 11754175 - 11754123
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacg 75  Q
    |||||||||| ||||||||||| ||||||||||  ||||||||| |||||||||    
T  11754175 ttttaacttt-gttttaaagtagcttttagatcgaaaaaaagtctggccaaacg 11754123  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 12247714 - 12247675
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaa 62  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  12247714 ttttaacttt-gttttaaagtaacttttagatcgtaaaaaa 12247675  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 20480286 - 20480208
Alignment:
Q  2 tttatttttaaatctcttccttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacgcaccc 80  Q
    |||||||||||| ||||| |||||||||| |||||||||||| |||||||| | || ||||||||||||||||||||||    
T  20480286 tttatttttaaagctctttcttttaacttgagttttaaagtagcttttagaccatagaaaagtcaggccaaacgcaccc 20480208  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4680350 - 4680429
Alignment:
Q  1 ctttatttttaaatctcttccttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacgcaccc 80  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||| |||||    
T  4680350 ctttatttttaaagctctttcttttaactttaattttaaagtaatttttagaccataaaaaaatcaggccaaacacaccc 4680429  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 20536711 - 20536757
Alignment:
Q  6 tttttaaatctcttccttttaactttagttttaaagtaacttttaga 52  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||    
T  20536711 tttttaaagctcttccttttaactttagttttaaagtaatttttaga 20536757  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18180699 - 18180626
Alignment:
Q  1 ctttatttttaaatctcttccttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaac 74  Q
    |||||||| |||| |||||  ||||||||||| |||||||||| |||||||| | |||||||| | ||||||||    
T  18180699 ctttatttgtaaagctcttagttttaactttatttttaaagtagcttttagaccataaaaaagccgggccaaac 18180626  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 93890 - 93846
Alignment:
Q  1 ctttatttttaaatctcttccttttaactttagttttaaagtaac 45  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  93890 ctttatttttaaagctctttcttttaactttagttttaaaataac 93846  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 1118107 - 1118159
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacg 75  Q
    |||||||||| ||||||||||| ||||||||||  ||||||||| |||||||||    
T  1118107 ttttaacttt-gttttaaagtagcttttagatcgaaaaaaagtctggccaaacg 1118159  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 18166781 - 18166729
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacg 75  Q
    |||||||||| |||||||||||||||||||| |  ||||||||| |||||||||    
T  18166781 ttttaacttt-gttttaaagtaacttttagaccgaaaaaaagtctggccaaacg 18166729  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 35287255 - 35287216
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaa 62  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  35287255 ttttaacttt-gttttaaagtaacttttagatcgtaaaaaa 35287216  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31676207 - 31676164
Alignment:
Q  1 ctttatttttaaatctcttccttttaactttagttttaaagtaa 44  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  31676207 ctttattttgaaaactcttccttttaactttagttttaaagtaa 31676164  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 52620747 - 52620799
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacg 75  Q
    |||||||||| |||||||||||||||||||| |  ||||||||| |||||||||    
T  52620747 ttttaacttt-gttttaaagtaacttttagaccgaaaaaaagtctggccaaacg 52620799  T

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Target: scaffold1793 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 214 - 162
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacg 75  Q
    |||||||||| |||||||||||||||||||| | |||||||||| |||||||||    
T  214 ttttaacttt-gttttaaagtaacttttagaccgtaaaaaagtctggccaaacg 162  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 9453444 - 9453502
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacgcaccc 80  Q
    ||||||||||| | ||||||||||||||||| | | |||||||  ||||||||||||||    
T  9453444 ttttaactttattcttaaagtaacttttagaccttgaaaaagtagggccaaacgcaccc 9453502  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 22947673 - 22947634
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaa 62  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  22947673 ttttaacttt-gttttaaagtaacttttagatcgtaaaaaa 22947634  T

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Target: scaffold1822 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 370 - 418
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggcca 71  Q
    |||||||||| |||||||||||||||||||| | |||||||||| |||||    
T  370 ttttaacttt-gttttaaagtaacttttagaccgtaaaaaagtctggcca 418  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 28746266 - 28746215
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaacg 75  Q
    |||||||||| |||||||||||||||||||| || ||||||||| |||||||||    
T  28746266 ttttaacttt-gttttaaagtaacttttaga-ccaaaaaaagtctggccaaacg 28746215  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 2530211 - 2530262
Alignment:
Q  22 ttttaactttagttttaaagtaacttttagatcctaaaaaagtcaggccaaac 74  Q
    |||||||||| ||||||||||| |||||||| || ||||||||| ||||||||    
T  2530211 ttttaacttt-gttttaaagtagcttttagacccaaaaaaagtctggccaaac 2530262  T

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