View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1721_low_56 (Length: 215)
Name: NF1721_low_56
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_56 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 31025843 - 31025930
Alignment:
| Q |
128 |
tttgatacttatttatgtagattattaatcattgtacttgagaccatgacgattatggtcttatgcgcttttgttgaacactgttgtt |
215 |
Q |
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| T |
31025843 |
tttgatacttatttatgtagattattaatcaatgtacttgagaccatgacgattaaggtcttatgcacttttgttgaacattgttgtt |
31025930 |
T |
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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 31051406 - 31051484
Alignment:
| Q |
71 |
atatttgtatgagttgatacatgttctaattgaacagaacctatccaaattgtttgctttgatacttatttatgtagat |
149 |
Q |
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| T |
31051406 |
atatttctacgagttgatacatgttctcattgaacagaacctatctatattgtttgctttgatacttatttatatagat |
31051484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 14805 - 14712
Alignment:
| Q |
71 |
atatttgtatgagttgatacatgttctaattgaacagaacctatccaaattgtttgctttgatacttatttatgtagattattaatcattgtac |
164 |
Q |
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| T |
14805 |
atatatgtttgagttgagacatgttctaattgaagagtacttatctaaattgtttggtttgatatttatttatatagatttttaatcaatgtac |
14712 |
T |
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