View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1721_low_7 (Length: 499)
Name: NF1721_low_7
Description: NF1721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1721_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 150 - 432
Target Start/End: Complemental strand, 48084561 - 48084279
Alignment:
| Q |
150 |
ataataccctgagaactttacggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataata |
249 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48084561 |
ataataccctgagaactttgcggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataata |
48084462 |
T |
|
| Q |
250 |
gttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcacttactcttttc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48084461 |
gttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcacttactcttttc |
48084362 |
T |
|
| Q |
350 |
tgatacaattcaaatagccttagctgcttgtagattcgaatgatatggatctgccaaaccaaccaatcatacatgtgttaatt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48084361 |
tgatacaattcaaatagccttagctgcttgtagattcgaatgatatggatctgccaaaccaaccaatcatacatgtgttaatt |
48084279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 48084666 - 48084601
Alignment:
| Q |
71 |
cattgttaaacatgcaaccatgttcatattaattattaaatatcctttaacacttttggcaattgg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48084666 |
cattgttaaacatgcaaccatgttcatattaattattaaatatcctttaacacttttgtcaattgg |
48084601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 48084253 - 48084207
Alignment:
| Q |
429 |
aatttagtagcattatattaatgttttaacaatttgaattactacta |
475 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48084253 |
aatttggtagcattatattaatgttttaacaatttgaattattacta |
48084207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 48084719 - 48084686
Alignment:
| Q |
7 |
tagataatactagacatgtttgaaagtgacacac |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
48084719 |
tagataatactagacatgtttgaaagtgacacac |
48084686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 48075125 - 48075013
Alignment:
| Q |
161 |
agaactttacggtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaa |
260 |
Q |
| |
|
|||| |||||| ||||| |||||||| || ||||||||||| || |||||| || |||||||| |||||||| || | | |||||||||| |||| |
|
|
| T |
48075125 |
agaattttacgatactcagaaatgaggtacacaacataatctggaagtctaaattggcgtgatcttgcagaaaaaggtacaagaaaatagttgttcacaa |
48075026 |
T |
|
| Q |
261 |
aatcattgccacc |
273 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
48075025 |
aatcatttccacc |
48075013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 339
Target Start/End: Original strand, 35377077 - 35377219
Alignment:
| Q |
197 |
taatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctc |
296 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||| ||||||||| | |||| |
|
|
| T |
35377077 |
taatctggaagagaaaattggcgagatcttgctgaaaatgggaccaaataataattgttgacaaaatcgttgcctccaagaacgatgagtacaattgctt |
35377176 |
T |
|
| Q |
297 |
tgttgactaggtttctt-gctccttctgaaccaatgtgtgcact |
339 |
Q |
| |
|
||| ||||| ||||||| ||| | |||| |||||| |||||||| |
|
|
| T |
35377177 |
tgtggacta-gtttcttagcttcctctgcaccaatatgtgcact |
35377219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 341
Target Start/End: Original strand, 35358405 - 35358574
Alignment:
| Q |
172 |
gtactcggaaatgagataacggacataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgcca |
271 |
Q |
| |
|
|||||| || |||||||| |||||| | ||| ||||||||||| |||||||| |||||||| || ||||||||||| || ||||||||||| ||||| |
|
|
| T |
35358405 |
gtactcagatatgagataggtgacatagtttggaagagaaaattggcgagatctagctgaaaatgggaccaaataataattattgacaaaatcgttgcct |
35358504 |
T |
|
| Q |
272 |
ccaagagtgatgagtacgagtgctctgttgactaggtttcttgctccttctgaaccaatgtgtgcactta |
341 |
Q |
| |
|
||||| |||||||||| | |||| |||||||||| | | | ||||| |||| |||||| |||||||||| |
|
|
| T |
35358505 |
ccaagcatgatgagtacaattgctttgttgactagttgtttagctccctctgcaccaatttgtgcactta |
35358574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 35370606 - 35370712
Alignment:
| Q |
200 |
tctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgctctgt |
299 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || || ||||||| ||||| |||||||| ||||| |||| | |||||||||| |||||| ||| |
|
|
| T |
35370606 |
tctggaagagaaaattggcgagatcttgctgaaaatggggcccaataataattgttaacaaaatcgttgcctccaataatgatgagtacaagtgctttgt |
35370705 |
T |
|
| Q |
300 |
tgactag |
306 |
Q |
| |
|
||||||| |
|
|
| T |
35370706 |
tgactag |
35370712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 29768432 - 29768496
Alignment:
| Q |
212 |
aattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaag |
276 |
Q |
| |
|
||||||||||| || |||||||| ||| | | |||||||||||||||||||||| |||||||| |
|
|
| T |
29768432 |
aattgacgagacctagctgaaaatggagtgagaaaatagttgttgacaaaatcattaccaccaag |
29768496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 6341675 - 6341754
Alignment:
| Q |
194 |
acataatctgggagagaaaattgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccacc |
273 |
Q |
| |
|
|||||||| || |||| | ||| ||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
6341675 |
acataatcaggaagagcatattcacgagatctggctgagtaaggaaccaaataatagttgttcacaaaatcattcccacc |
6341754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 7386882 - 7386964
Alignment:
| Q |
213 |
attgacgagatcttgctgaaaaaggaaccaaataatagttgttgacaaaatcattgccaccaagagtgatgagtacgagtgct |
295 |
Q |
| |
|
|||||||||| ||||| ||| |||| ||||| || ||||| || ||||||||||||||||||| ||| ||||| || |||||| |
|
|
| T |
7386882 |
attgacgagaccttgcagaataaggcaccaagtagtagttattcacaaaatcattgccaccaacagttatgagaacaagtgct |
7386964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University