View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_high_1 (Length: 543)
Name: NF17220_high_1
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 7e-75; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 51 - 263
Target Start/End: Complemental strand, 32359190 - 32358987
Alignment:
| Q |
51 |
ataaaatattcgatctttttaaatgtcaaaatgatagtgggaattagcagcacatccagagagcaataattgaaaatccaacaaatgactagtttatcat |
150 |
Q |
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| T |
32359190 |
ataaaatattcaatctttctaaatgtcaaaatgatagttggaattagcaa---atccagagagcagtaattgaaaattcaacaaatgactagtttatcat |
32359094 |
T |
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| Q |
151 |
acaatcagagcattaagcttctagttatacaacttgaataaaaagatgaaagcttgcttatattcagctgtatagggttaatgaaatttgcagcagcttg |
250 |
Q |
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| T |
32359093 |
acaatcag--cattaagcttctagttatacaacttgaataaaaagatgaaagctt----atattcagctgaatagggttaatgaaatttgcagcagcttg |
32359000 |
T |
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| Q |
251 |
ttacaattgcaca |
263 |
Q |
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||||||||||||| |
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| T |
32358999 |
ttacaattgcaca |
32358987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 391 - 525
Target Start/End: Complemental strand, 32372411 - 32372278
Alignment:
| Q |
391 |
tcattttaaattatcatgaaagaatcaaatacttttcaccatttaaacttagcaatcaaaattgtctacataatcaagacttgacttgtgaactcgtaac |
490 |
Q |
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| T |
32372411 |
tcattttaaaatatcatgaa-gaatcaaatacttttcaccacttaaacttagcaatcaaaattgtctacataatcaggacttgacttgtaaactcgtaag |
32372313 |
T |
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| Q |
491 |
agtccacggtcatggataataaaaaatgacttaaa |
525 |
Q |
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| T |
32372312 |
agtacacggtcatggataataaaaaatgacttaaa |
32372278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 265 - 368
Target Start/End: Complemental strand, 32358917 - 32358815
Alignment:
| Q |
265 |
aaatgaattgacaaccttcatacatctgtgcaatctttcctccaaaactggtgcactctttcagaaatcattacactttccaagattatttaatacctaa |
364 |
Q |
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|||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
32358917 |
aaatgagttgacaaccttcatacttctatgcaatcttgcctccaaaactggtgcactctttcagaaatcattacgctttccaaga-tatttaatacctaa |
32358819 |
T |
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| Q |
365 |
gaca |
368 |
Q |
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|||| |
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| T |
32358818 |
gaca |
32358815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 32372509 - 32372433
Alignment:
| Q |
259 |
gcacataaatgaattgacaaccttcatacatctgtgcaatctttcctccaaaactggtgcactctttcagaaatcat |
335 |
Q |
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| T |
32372509 |
gcacaaaaatgagttgacaaccttcatacatctgtgcaatctttcctccaaaagtggtgtagtctttcagaaatcat |
32372433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 32358794 - 32358745
Alignment:
| Q |
391 |
tcattttaaattatcatgaaagaatcaaatacttttcaccatttaaactt |
440 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32358794 |
tcattttaaaatatcatgaaagaatcaaatacttttcaccatttaaactt |
32358745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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