View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_high_10 (Length: 343)
Name: NF17220_high_10
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_high_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 8641481 - 8641811
Alignment:
| Q |
13 |
catcattgatggttttgggtacaataacttggaggttggtggtgttctaggtaatccttttgaaaataaatcagttctcaatctataccttcttgacagt |
112 |
Q |
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||||||||||||||||||| |||||||||||||| | |||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8641481 |
catcattgatggttttgggaacaataacttggagatcggtggtgttcaaggtactgtctttgaaaataaatcagttctcaatctatactttcttgacagt |
8641580 |
T |
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| Q |
113 |
ggagcttattccaaagttccgacgattcatggttatgattggatcaagccctcacagcacctttggtttgagcgaacgtctgctaatcttcgggtactat |
212 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8641581 |
ggagattattccaaagttccgacgattcctggttatgattggatcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactat |
8641680 |
T |
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| Q |
213 |
cacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8641681 |
cacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcg |
8641780 |
T |
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| Q |
313 |
ccacaaaaagaagctgctcctggtcttgcat |
343 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8641781 |
ccacaaaaagaagctgctcctggtcttgcat |
8641811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 8648061 - 8648391
Alignment:
| Q |
13 |
catcattgatggttttgggtacaataacttggaggttggtggtgttctaggtaatccttttgaaaataaatcagttctcaatctataccttcttgacagt |
112 |
Q |
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||||||||||||||||||| |||||||||||||| | |||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8648061 |
catcattgatggttttgggaacaataacttggagatcggtggtgttcaaggtactgtctttgaaaataaatcagttctcaatctatactttcttgacagt |
8648160 |
T |
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| Q |
113 |
ggagcttattccaaagttccgacgattcatggttatgattggatcaagccctcacagcacctttggtttgagcgaacgtctgctaatcttcgggtactat |
212 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8648161 |
ggagattattccaaagttccgacgattcctggttatgattggatcaagccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactat |
8648260 |
T |
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| Q |
213 |
cacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648261 |
cacattagcttataccaaattatctagtttctctttattgtttagtatctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcg |
8648360 |
T |
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| Q |
313 |
ccacaaaaagaagctgctcctggtcttgcat |
343 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8648361 |
ccacaaaaagaagctgctcctggtcttgcat |
8648391 |
T |
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