View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17220_high_16 (Length: 255)

Name: NF17220_high_16
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17220_high_16
NF17220_high_16
[»] chr8 (6 HSPs)
chr8 (7-255)||(35016491-35016740)
chr8 (22-95)||(8629032-8629105)
chr8 (50-122)||(13561360-13561431)
chr8 (50-93)||(8536123-8536167)
chr8 (22-99)||(29699177-29699256)
chr8 (63-99)||(32157075-32157111)
[»] chr2 (3 HSPs)
chr2 (50-146)||(42817401-42817495)
chr2 (26-99)||(3673734-3673809)
chr2 (50-99)||(37053545-37053596)
[»] chr1 (2 HSPs)
chr1 (24-152)||(45107548-45107676)
chr1 (68-122)||(23544687-23544739)
[»] chr3 (3 HSPs)
chr3 (73-122)||(37273107-37273156)
chr3 (56-122)||(1217848-1217911)
chr3 (22-99)||(51278225-51278304)
[»] scaffold0508 (1 HSPs)
scaffold0508 (23-99)||(9843-9921)
[»] chr7 (1 HSPs)
chr7 (22-98)||(45593788-45593866)
[»] chr6 (2 HSPs)
chr6 (50-122)||(8365024-8365093)
chr6 (23-123)||(29274276-29274375)
[»] chr5 (2 HSPs)
chr5 (76-146)||(36639501-36639567)
chr5 (56-122)||(41957499-41957562)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 35016491 - 35016740
Alignment:
Q  7 ttatcaataccttgttttatcatatatatgcttatctattacatatttctataacaaaattaaatgaagtcaaaatgttttcatataagttattataaac 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35016491 ttatcaataccttgttttatcatatatatgcttatatattacatatttctataacaaaattaaatgaagtcaaaatgttttcatataagttattataaac 35016590  T
Q  107 tgttttcataagctatttctgaagagcatatgaaagtaagttataaatttgttttcataatctgtttttataaccc-ttgttttgactttataaatctat 205  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  35016591 tgttttcataagctatttctgaagagcttatgaaagtaagttataaatttgttttcataatctgtttttacaaccctttgttttgactttataaatctat 35016690  T
Q  206 aatagagctatactcatttaatttgatcaattttttattttctatctcat 255  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35016691 aatagagctatacttatttaatttgatcaattttttattttctatctcat 35016740  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 8629032 - 8629105
Alignment:
Q  22 tttatcatatatatgcttatctattacatatttctataacaaaattaaatgaagtcaaaatgttttcatataag 95  Q
    |||||||||||  ||||||| ||| |  ||||||||||||||||| ||||  ||| |||||||||| |||||||    
T  8629032 tttatcatataagtgcttatttataagctatttctataacaaaataaaattgagttaaaatgtttttatataag 8629105  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 13561431 - 13561360
Alignment:
Q  50 tatttctataaca--aaattaaatgaagtcaaaatgttttcatataagttattataaactgttttcataagctat 122  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||||   |||||||  |||||||| |||||||    
T  13561431 tatttctataacagaaaattaaataaagtcaaattgttttcatataa---attataacttgttttcacaagctat 13561360  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 8536167 - 8536123
Alignment:
Q  50 tatttctataacaaaattaaa-tgaagtcaaaatgttttcatata 93  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  8536167 tatttctataacaaaataaaagtgaagtcaaattgttttcatata 8536123  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 29699177 - 29699256
Alignment:
Q  22 tttatcatatatatgcttatctattacatatttctataacaaaa--ttaaatgaagtcaaaatgttttcatataagttat 99  Q
    ||||||||||| |||||||| ||  |  ||||||||||||||||  | |||| ||||||||||||| |||| ||||||||    
T  29699177 tttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaaaatgttgtcatctaagttat 29699256  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 32157111 - 32157075
Alignment:
Q  63 aaattaaatgaagtcaaaatgttttcatataagttat 99  Q
    |||||||||||||||||| |||||||||||| |||||    
T  32157111 aaattaaatgaagtcaaattgttttcatataggttat 32157075  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 42817495 - 42817401
Alignment:
Q  50 tatttctataacaaaa--ttaaatgaagtcaaaatgttttcatataagttattataaactgttttcataagctatttctgaagagcatatgaaagtaag 146  Q
    |||||||||| |||||  | ||||||||||||  ||||||||||||||| ||   ||||||||||||||||||| ||||||||||| |||| |||||||    
T  42817495 tatttctataccaaaagataaaatgaagtcaagctgttttcatataagtaat---aaactgttttcataagcta-ttctgaagagcttatggaagtaag 42817401  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 3673734 - 3673809
Alignment:
Q  26 tcatatatatgcttatctattacatatttctataacaaa--attaaatgaagtcaaaatgttttcatataagttat 99  Q
    |||||||  ||||||| |||||  |||||||||||||||  || |||| |||| ||| ||||||||||||||||||    
T  3673734 tcatataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataagttat 3673809  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 37053545 - 37053596
Alignment:
Q  50 tatttctataaca--aaattaaatgaagtcaaaatgttttcatataagttat 99  Q
    |||||||||||||  |||| |||| |||||||| ||||||||||||||||||    
T  37053545 tatttctataacagaaaataaaataaagtcaaactgttttcatataagttat 37053596  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 45107548 - 45107676
Alignment:
Q  24 tatcatatatatgcttatctattacatatttctataacaaaattaaa-tgaagtcaaaatgttttcatataagttattataaactgttttcataagctat 122  Q
    |||||||||  ||||||||||| |  ||||||||||| |||| |||| | |||||||| | |||||||||||||||| || |   |||||||||||||||    
T  45107548 tatcatataagtgcttatctataagctatttctataagaaaaataaaataaagtcaaactattttcatataagttataattagtcgttttcataagctat 45107647  T
Q  123 ttctgaagagcatatgaaagtaagttataa 152  Q
      | | ||||| ||||||||||||||||||    
T  45107648 cac-ggagagcttatgaaagtaagttataa 45107676  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 23544739 - 23544687
Alignment:
Q  68 aaatgaagtcaaaatgttttcatataagttattataaactgttttcataagctat 122  Q
    |||| |||||||| |||||||||||||| |||  |||||||||||||||||||||    
T  23544739 aaattaagtcaaattgttttcatataagctat--taaactgttttcataagctat 23544687  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 37273107 - 37273156
Alignment:
Q  73 aagtcaaaatgttttcatataagttattataaactgttttcataagctat 122  Q
    |||||||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  37273107 aagtcaaattgtttttatataagatataataaactgttttcataagctat 37273156  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 1217911 - 1217848
Alignment:
Q  56 tataacaaaattaaatgaagtcaaaatgttttcatataagttattataaactgttttcataagctat 122  Q
    ||||||||||  ||||||||| ||| ||||||||| ||||||||   || |||||||||||||||||    
T  1217911 tataacaaaagaaaatgaagttaaattgttttcatgtaagttat---aagctgttttcataagctat 1217848  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 51278304 - 51278225
Alignment:
Q  22 tttatcatatatatgcttatctattacatatttctataacaaa--attaaatgaagtcaaaatgttttcatataagttat 99  Q
    |||||||||||  |||| || ||| |  |||||||||||||||  ||||||| |||||||| ||||||||| ||||||||    
T  51278304 tttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgttttcatttaagttat 51278225  T

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Target: scaffold0508 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 9921 - 9843
Alignment:
Q  23 ttatcatatatatgcttatctattacatatttctataacaaaa--ttaaatgaagtcaaaatgttttcatataagttat 99  Q
    ||||||||||  ||||||| ||| |  ||||||||||||||||  | |||| ||||||||| |||||||||||||||||    
T  9921 ttatcatataggtgcttatgtataagttatttctataacaaaaaataaaattaagtcaaaaagttttcatataagttat 9843  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 45593866 - 45593788
Alignment:
Q  22 tttatcatatatatgcttatctattacatatttctataacaaaa--ttaaatgaagtcaaaatgttttcatataagtta 98  Q
    ||||||||||| |||||||| ||| |  ||||||| ||||||||  | |||| |||||||| |||||||||||||||||    
T  45593866 tttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataagtta 45593788  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 8365093 - 8365024
Alignment:
Q  50 tatttctataacaaaattaaatgaagtcaaaatgttttcatataagttattataaactgttttcataagctat 122  Q
    |||||||||| ||||| ||||| ||||  || |||||| |||||||||||   ||||||||||||||||||||    
T  8365093 tatttctatatcaaaagtaaattaagttcaattgtttttatataagttat---aaactgttttcataagctat 8365024  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 29274375 - 29274276
Alignment:
Q  23 ttatcatatatatgcttatctattacatatttctataacaaaa--ttaaatgaagtcaaaatgttttcatataagttattataaactgttttcataagct 120  Q
    |||||||| | |||||||| ||| |  |||||||||| |||||  | |||| |||||||| |||||||||||||| |||   |||||||||||||||| |    
T  29274375 ttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctat---aaactgttttcataagat 29274279  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 36639501 - 36639567
Alignment:
Q  76 tcaaaatgttttcatataagttattataaactgttttcataagctatttctgaagagcatatgaaagtaag 146  Q
    |||||||||||||||| |||   ||||| |||||||||||||||||| | |||||||| ||||||| ||||    
T  36639501 tcaaaatgttttcatacaag---ttatagactgttttcataagctatct-tgaagagcttatgaaaataag 36639567  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 41957562 - 41957499
Alignment:
Q  56 tataacaaaattaaatgaagtcaaaatgttttcatataagttattataaactgttttcataagctat 122  Q
    ||||||||||  ||||||||| ||| ||||||||| ||||||||   || |||||||||||||||||    
T  41957562 tataacaaaagaaaatgaagttaaattgttttcatgtaagttat---aagctgttttcataagctat 41957499  T

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