View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17220_high_2 (Length: 529)

Name: NF17220_high_2
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17220_high_2
NF17220_high_2
[»] chr1 (3 HSPs)
chr1 (18-519)||(32920343-32920847)
chr1 (18-55)||(30850168-30850205)
chr1 (318-375)||(30849884-30849944)
[»] chr7 (4 HSPs)
chr7 (18-375)||(43290938-43291306)
chr7 (143-213)||(40503574-40503645)
chr7 (145-213)||(20061325-20061394)
chr7 (18-52)||(20061514-20061548)
[»] chr4 (6 HSPs)
chr4 (84-375)||(33841193-33841487)
chr4 (128-213)||(23442314-23442404)
chr4 (144-194)||(37161812-37161863)
chr4 (128-209)||(9510854-9510936)
chr4 (452-517)||(8158097-8158162)
chr4 (18-59)||(33841521-33841562)
[»] chr2 (10 HSPs)
chr2 (84-375)||(18834679-18834971)
chr2 (234-351)||(1759372-1759495)
chr2 (84-339)||(11158317-11158573)
chr2 (270-339)||(8489654-8489721)
chr2 (18-59)||(18834604-18834645)
chr2 (140-191)||(8489903-8489955)
chr2 (128-209)||(29285523-29285605)
chr2 (128-209)||(29306907-29306989)
chr2 (297-351)||(35605587-35605641)
chr2 (18-47)||(11158242-11158271)
[»] chr8 (1 HSPs)
chr8 (137-339)||(565874-566083)
[»] chr3 (3 HSPs)
chr3 (133-202)||(445429-445499)
chr3 (18-53)||(445301-445336)
chr3 (18-59)||(17650580-17650621)
[»] chr5 (5 HSPs)
chr5 (234-351)||(32249205-32249321)
chr5 (268-348)||(7860264-7860342)
chr5 (234-348)||(32236617-32236736)
chr5 (168-213)||(7623837-7623882)
chr5 (168-212)||(28482592-28482636)
[»] scaffold0140 (1 HSPs)
scaffold0140 (248-347)||(17018-17118)
[»] chr6 (7 HSPs)
chr6 (139-201)||(33350826-33350889)
chr6 (18-59)||(5934202-5934243)
chr6 (21-59)||(6818175-6818213)
chr6 (234-351)||(5933909-5934030)
chr6 (18-54)||(34244548-34244584)
chr6 (297-351)||(31001361-31001415)
chr6 (247-292)||(6817068-6817113)
[»] scaffold0039 (2 HSPs)
scaffold0039 (18-59)||(111684-111725)
scaffold0039 (234-348)||(110231-110343)


Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 32920847 - 32920343
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccgggtatatgtacaatactcataacttacatacctatttttacttagttgtttcgtcgtaattg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32920847 agcatgggtactccaaacatggagaagtaccggtaccgggtacatgtacaatactcataacttacatacctatttttacttagttgtttcgtcgtagttg 32920748  T
Q  118 gtgaaaatagaaacttacaggcggtggaaaaataaccaaaattattttcctttttattgtattttaattctctctctcgcttttggtgaaaatagttgaa 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32920747 gtgaaaatagaaacttacgggcggtggaaaaataaccaaaattattttcctttttattgtattttaattctctctcttgcttttggtgaaaatagttgaa 32920648  T
Q  218 gggtgcacnnnnnnngtaaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaatcttttttgttgatgttttatatcaacgtacat 317  Q
    ||||||||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32920647 gggtgcacaaaaaaagtaaaactctaaaacaacatgataatagaagtgtagtaattcacttgaaaaatcttttttgttgatgttttatatcaatgtacat 32920548  T
Q  318 gtaccttcattttttaaaatttaccgtattacgtcgtacccgtacctatgcatcatagatatt---ttgcttgcagagctcaccacaattcactgaggtt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  32920547 gtaccttcattttttaaaatttaccgtattacgtcgtacccgtacctatgcatcatagatattttattgcttgcagagctcaccacaattcactgaggtt 32920448  T
Q  415 tactcctggaaacggaattgggaatcgaggaaatgacttgctaatccgattccctcctatccatcagactcatcactgaccaagcttcaaagtatcatgc 514  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32920447 tactcctggcaacggaaatgggaatcgaggaaatggcttgctaatccgattccctcctatccatcagactcatcactgaccaagcttctaagtatcatgc 32920348  T
Q  515 ctatg 519  Q
    |||||    
T  32920347 ctatg 32920343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 30850205 - 30850168
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccg 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30850205 agcatgggtactccaaacatggagaagtaccggtaccg 30850168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 30849944 - 30849884
Alignment:
Q  318 gtaccttcattttttaaaatttaccgtattacgt---cgtacccgtacctatgcatcatag 375  Q
    ||||||||||||||||||||||||| ||||||||    |||||  ||||||||||||||||    
T  30849944 gtaccttcattttttaaaatttaccctattacgtaccggtaccaatacctatgcatcatag 30849884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 43291306 - 43290938
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccgggtatatgtacaatactcataactta---------catacctatttttacttagttgtttcg 108  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||   |||||  ||||||         ||| ||||||||||||| || ||||||    
T  43291306 agcatgggtactccaaacatggagaagtaccggtaccgggtacacgtatggtactcgcaacttagtaccgaaccatgcctatttttacttggtagtttcg 43291207  T
Q  109 tcgtaattggtgaaaatagaaacttacaggcggtggaaaaataaccaaaattattttccttttt-attgtattttaattctctctctcgcttttggtgaa 207  Q
    ||||| |||||| |   | |||| ||| ||| ||| |||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||    
T  43291206 tcgtagttggtgcagcaa-aaacgtacgggcagtgaaaaaattaccaaaattattttgcttttttattgtattttaattctctctcttgcttttgatgaa 43291108  T
Q  208 aatagttgaaggg-tgcacnnnnnnngtaaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaatcttttttgttgatgttttata 306  Q
    ||| || || ||| |||||       |||||||||| || ||||||||| |||||||||| ||||||| |||||||||| |||||| |||||||||||||    
T  43291107 aatggtagaggggatgcacaaaaaaagtaaaactctcaagcaacatgatgatagaagtgtagtaattcgcttgaaaaatatttttt-ttgatgttttata 43291009  T
Q  307 tcaacgtacatgtaccttcattttttaaaatttaccgtattacgt--cgtacccgtacctatgcatcatag 375  Q
     ||||||||  |||||||||||||||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  43291008 ccaacgtacccgtaccttcattttttaaaatttgccgtattatgtaccgtacccgtacctatgcatcatag 43290938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 40503645 - 40503574
Alignment:
Q  143 ggaaaaataaccaaaattattttccttttt-attgtattttaattctctctctcgcttttggtgaaaatagt 213  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||||||| ||| | ||||| ||||||||||    
T  40503645 ggaaaaataaccaaaattattttacttttttattgtatttcaattctctttcttgtttttgatgaaaatagt 40503574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 20061394 - 20061325
Alignment:
Q  145 aaaaataaccaaaattatttt-cctttttattgtattttaattctctctctcgcttttggtgaaaatagt 213  Q
    ||||||||||||||||||||| | ||||||||  |||| |||| ||||||| ||||||| ||||||||||    
T  20061394 aaaaataaccaaaattattttgcttttttatttgatttcaattatctctctagcttttgatgaaaatagt 20061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 20061548 - 20061514
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggta 52  Q
    |||||||||||||||||||||| ||||||||||||    
T  20061548 agcatgggtactccaaacatggtgaagtaccggta 20061514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 84 - 375
Target Start/End: Complemental strand, 33841487 - 33841193
Alignment:
Q  84 tacctatttttacttagttgtttcgtcgtaattggtgaaaatagaaacttacaggcggtggaaaaataaccaaaattattttccttttt-attgtatttt 182  Q
    |||||||||||||||||||||||||||||| |||||| |   | |||| ||| ||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  33841487 tacctatttttacttagttgtttcgtcgtagttggtgcagcaa-aaacgtacgggcggtgaaaaaataaccaaaattatttttcttttttattgtatttt 33841389  T
Q  183 aattctctctctcgcttttggtgaaaatagttgaaggg-tgcacnnnnnnngtaaaactctaaaacaacatgataatagaagtgtggtaattcacttgaa 281  Q
    |||||||||||| ||||||| |||||||||| || ||| |||||       |||||||||| || ||||||||| |||||||||| ||||||||||||||    
T  33841388 aattctctctcttgcttttgatgaaaatagtagaggggatgcacacaaaaagtaaaactctcaagcaacatgatgatagaagtgtagtaattcacttgaa 33841289  T
Q  282 aaatcttttttgttgatgttttatatcaacgtacatgtaccttcattttttaaaatttaccgtattacgt--cgtacccgtacctatgcatcatag 375  Q
    |||||||||||  |||||||||||| |||||||   |||||||||| |||| ||||||  ||||||| ||  | |||| |||||||||||||||||    
T  33841288 aaatctttttttatgatgttttataccaacgtatccgtaccttcatctttttaaatttggcgtattatgttccatacctgtacctatgcatcatag 33841193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 23442404 - 23442314
Alignment:
Q  128 aaacttacaggcggtggaaaaataaccaaaattattttccttttt-----attgtattttaattctctctctcgcttttggtgaaaatagt 213  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||      |||||||| |||||||||||| |||| |  ||||||||||    
T  23442404 aaacgtacaggcggtggaaaaataaccaaaattattttgctttttttttatttgtatttcaattctctctcttgcttatcatgaaaatagt 23442314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 37161812 - 37161863
Alignment:
Q  144 gaaaaataaccaaaattatttt-cctttttattgtattttaattctctctct 194  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  37161812 gaaaaataaccaaaattattttgcttttttattgtattttaattccctctct 37161863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 9510854 - 9510936
Alignment:
Q  128 aaacttacaggcggtggaaaaataaccaaaattattttcctttt-tattgtattttaattctctctctcgcttttggtgaaaa 209  Q
    |||| ||||||| ||||||||||| | |||| |||||| ||||| ||||||| ||  ||||||||||| ||||||| ||||||    
T  9510854 aaacgtacaggcagtggaaaaatagcgaaaactattttgcttttttattgtacttcgattctctctcttgcttttgatgaaaa 9510936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 517
Target Start/End: Original strand, 8158097 - 8158162
Alignment:
Q  452 ttgctaatccgattccctcctatccatcagactcatcactgaccaagcttcaaagtatcatgccta 517  Q
    |||||| || ||||| |||||||||||||  || ||||| |  |||||||||||||||||||||||    
T  8158097 ttgctactcagattcactcctatccatcaatcttatcacaggtcaagcttcaaagtatcatgccta 8158162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 33841562 - 33841521
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccgggta 59  Q
    |||||||||||||||||||||||  ||||||| |||||||||    
T  33841562 agcatgggtactccaaacatggatgagtaccgttaccgggta 33841521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 84 - 375
Target Start/End: Original strand, 18834679 - 18834971
Alignment:
Q  84 tacctatttttacttagttgtttcgtcgtaattggtgaaaatagaaacttacaggcggtggaaaaataaccaaaattattttcctttttattgtatttta 183  Q
    |||||||||||||||||||||||||| ||| |||||| |   | |||| | | ||||||| |||| |||||||||||||||| ||||| |||||||||||    
T  18834679 tacctatttttacttagttgtttcgttgtagttggtgcagcaa-aaacgtccgggcggtgaaaaattaaccaaaattattttacttttcattgtatttta 18834777  T
Q  184 attctctctctcgcttttggtgaaaatagttgaaggg-tgcacnnnnnnngtaaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaa 282  Q
    |||||||| || ||||||| |||||||||| || | | |||||       |||||||||| || ||||||||| |||||||||| |||||||||| ||||    
T  18834778 attctctcccttgcttttgatgaaaatagtagaggtgatgcacaaaaaaagtaaaactctcaagcaacatgatgatagaagtgtagtaattcactggaaa 18834877  T
Q  283 aatcttttttgttgatgttttatatcaacgtacatgtaccttcattttttaaaatttaccgtattacgt---cgtacccgtacctatgcatcatag 375  Q
    || |||||||  |||||||||||||||||||||  |||| || |  ||||||||||| |||||||||||     |||||| |||||||||||||||    
T  18834878 aaactttttt--tgatgttttatatcaacgtacccgtacattaacattttaaaatttgccgtattacgtaccactacccgaacctatgcatcatag 18834971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 351
Target Start/End: Original strand, 1759372 - 1759495
Alignment:
Q  234 taaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaa----tcttttttgttgatgttttatatcaacgtacatgtaccttca--t 327  Q
    ||||||||| ||  |||||||| |||||||||| |||||||||||||||||    |||||||| || |||||||||| ||||||||  |||||||||  |    
T  1759372 taaaactctcaagtaacatgatgatagaagtgtagtaattcacttgaaaaaaccttcttttttttttatgttttataccaacgtacccgtaccttcattt 1759471  T
Q  328 tttttaaaatttaccgtattacgt 351  Q
    |||||||||||| |||||||||||    
T  1759472 tttttaaaatttgccgtattacgt 1759495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 339
Target Start/End: Original strand, 11158317 - 11158573
Alignment:
Q  84 tacctatttttacttagttgtttcgtcgtaattggtgaaaatagaaacttacaggcggtggaaaaataaccaaaattattttcctttt-tattgtatttt 182  Q
    |||||||||||||||||||||||||||||  |||||| |   | |||| ||| | |||| |||||||| ||||||||||||| ||||| |||||||||||    
T  11158317 tacctatttttacttagttgtttcgtcgttgttggtgcagcaa-aaacgtacggacggttgaaaaatagccaaaattattttgcttttttattgtatttt 11158415  T
Q  183 aattctctctctcgcttttggtgaaaatagttga-agggtgcacnnnnnnngtaaaactctaaaacaacatgataatagaagtgtggtaattcacttgaa 281  Q
    |||    ||||| ||||||| |||||||| | ||  |||||||        |||||||||| || ||||||||| |||||||||| ||||||||||||||    
T  11158416 aat----tctcttgcttttgatgaaaatattagagggggtgcataaaaaatgtaaaactctcaagcaacatgatgatagaagtgtagtaattcacttgaa 11158511  T
Q  282 ----aaatcttttttgttgatgttttatatcaacgtacatgtaccttcattttttaaaattt 339  Q
         | | |||||| || |||||||||| |||||||    |||||| ||||||||||||||    
T  11158512 ttattattattttttttttatgttttataccaacgtaaccatacctttattttttaaaattt 11158573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 8489721 - 8489654
Alignment:
Q  270 aattcacttgaaaaatcttttttgttgatgttttatatcaacgtacatgtaccttcattttttaaaattt 339  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||  |||||||||||||| |||||||    
T  8489721 aattcacttgaaaaatctttttttt--atgttttatatcaacgtacccgtaccttcatttttaaaaattt 8489654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 18834604 - 18834645
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccgggta 59  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  18834604 agcatggatactccaaacatggagaagtaccggtacccggta 18834645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 8489955 - 8489903
Alignment:
Q  140 ggtggaaaaataaccaaaattatttt-cctttttattgtattttaattctctc 191  Q
    ||||||||||||||||||||||||||   |||||||||||||| |||||||||    
T  8489955 ggtggaaaaataaccaaaattattttgtttttttattgtatttcaattctctc 8489903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 29285523 - 29285605
Alignment:
Q  128 aaacttacaggcggtggaaaaataaccaaaattattttcctttt-tattgtattttaattctctctctcgcttttggtgaaaa 209  Q
    |||| ||||||| ||||||||||| | |||| |||||| ||||| ||||||| ||  ||||||||||| ||||||| ||||||    
T  29285523 aaacgtacaggcagtggaaaaataccgaaaactattttgcttttttattgtacttcgattctctctcttgcttttgatgaaaa 29285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 29306907 - 29306989
Alignment:
Q  128 aaacttacaggcggtggaaaaataaccaaaattattttcctttt-tattgtattttaattctctctctcgcttttggtgaaaa 209  Q
    |||| ||||||| ||||||||||| | |||| |||||| ||||| ||||||| ||  ||||||||||| ||||||| ||||||    
T  29306907 aaacgtacaggcagtggaaaaatatcaaaaactattttgcttttttattgtacttcgattctctctcttgcttttgatgaaaa 29306989  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 35605587 - 35605641
Alignment:
Q  297 atgttttatatcaacgtacatgtaccttcattttttaaaatttaccgtattacgt 351  Q
    ||||||||||||||  |||   |||||| ||||||||||||||||||||||||||    
T  35605587 atgttttatatcaaaatactcatacctttattttttaaaatttaccgtattacgt 35605641  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 11158242 - 11158271
Alignment:
Q  18 agcatgggtactccaaacatggagaagtac 47  Q
    ||||||||||||||||||||||||||||||    
T  11158242 agcatgggtactccaaacatggagaagtac 11158271  T

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Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 137 - 339
Target Start/End: Original strand, 565874 - 566083
Alignment:
Q  137 ggcggtggaaaaataaccaaaattattttcctttttattgtattttaattctctctctcgcttttggt--------gaaaatagttgaagggtgcacnnn 228  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||  |        ||||||||| |||||||||||       
T  565874 ggcggtggaaaaataaccaaaattattttgctttttattgtattttaattctatctcttgttttttttttttttatgaaaatagtagaagggtgcacaaa 565973  T
Q  229 nnnngtaaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaatcttttttgttgatgttttatatcaacgtacatgtaccttcatt 328  Q
        ||||| | || || |||||||||  ||||||||| |||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||    
T  565974 ataagtaaatcgctgaagcaacatgatggtagaagtgtagtaattcacttgaaaaatcttttttcc-gatgttttatatcaacgtacttgtaccttcatt 566072  T
Q  329 ttttaaaattt 339  Q
    |||||||||||    
T  566073 ttttaaaattt 566083  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 445429 - 445499
Alignment:
Q  133 tacaggcggtggaaaaataaccaaaattatttt-cctttttattgtattttaattctctctctcgcttttg 202  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||    
T  445429 tacaggtggtggaaaaataaccaaaattattttgcctttttattgtatttcaattctctctcttgcttttg 445499  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 445301 - 445336
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtac 53  Q
    |||||||||||| |||||||||||||||||||||||    
T  445301 agcatgggtacttcaaacatggagaagtaccggtac 445336  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 17650580 - 17650621
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccgggta 59  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||    
T  17650580 agcatgggtactccagacatggaaaagtatcggtaccgggta 17650621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 32249321 - 32249205
Alignment:
Q  234 taaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaatcttttttgttgatgttttatatcaacgtacatgtaccttcatttttta 333  Q
    ||||||||| || || ||||||  ||||||||| ||| ||||||||||||||| ||||| |||||||||||||  |||||||  ||||||| |||||| |    
T  32249321 taaaactctcaagcatcatgatggtagaagtgtagtacttcacttgaaaaatcgttttt-ttgatgttttatactaacgtacccgtaccttgatttttaa 32249223  T
Q  334 aaatttaccgtattacgt 351  Q
    |||||| |||||||||||    
T  32249222 aaatttgccgtattacgt 32249205  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 7860264 - 7860342
Alignment:
Q  268 gtaattcacttgaaaaatcttttttgttgatgttttatatcaacgtacatgtaccttcattttttaaaatttaccgtatta 348  Q
    |||||||||||||||||||||||    |||||||||||||||||||||  |||| |||||||||||||||||| |||||||    
T  7860264 gtaattcacttgaaaaatcttttac--tgatgttttatatcaacgtacccgtactttcattttttaaaatttatcgtatta 7860342  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 348
Target Start/End: Complemental strand, 32236736 - 32236617
Alignment:
Q  234 taaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaatcttttttgttg-----atgttttatatcaacgtacatgtaccttcatt 328  Q
    ||||||||| || || |||||| |||||||||| ||| |||||||||||  | |||||| ||      |||||||||| ||||||||  |||||||||||    
T  32236736 taaaactctcaagcatcatgatgatagaagtgtagtacttcacttgaaatttttttttttttttttttatgttttataccaacgtacccgtaccttcatt 32236637  T
Q  329 ttttaaaatttaccgtatta 348  Q
    ||| ||||||| ||||||||    
T  32236636 tttaaaaattttccgtatta 32236617  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 7623837 - 7623882
Alignment:
Q  168 tttttattgtattttaattctctctctcgcttttggtgaaaatagt 213  Q
    |||||||||||||| |||||||||||| | ||||| ||||||||||    
T  7623837 tttttattgtatttcaattctctctcttgtttttgatgaaaatagt 7623882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 28482592 - 28482636
Alignment:
Q  168 tttttattgtattttaattctctctctcgcttttggtgaaaatag 212  Q
    |||||||||||||| |||| ||||||| ||||||| |||||||||    
T  28482592 tttttattgtatttcaattgtctctcttgcttttgatgaaaatag 28482636  T

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Target: scaffold0140 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 17018 - 17118
Alignment:
Q  248 aacatgataatagaagtgtggtaattca-cttgaaaaatcttttttgttgatgttttatatcaacgtacatgtaccttcattttttaaaatttaccgtat 346  Q
    |||||||| |||||||||| |||||||| ||| |||||||||||||  ||||||||| || |||| |||  ||||||| |||||||||||||| ||||||    
T  17018 aacatgatgatagaagtgtagtaattcaacttaaaaaatctttttttatgatgttttgtaccaacctaccggtaccttaattttttaaaattttccgtat 17117  T
Q  347 t 347  Q
    |    
T  17118 t 17118  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 33350889 - 33350826
Alignment:
Q  139 cggtggaaaaataaccaaaattattttcctttt-tattgtattttaattctctctctcgctttt 201  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||    
T  33350889 cggtggaaaaataaccaaaattattttgcttttatattgtattttaattctcactcttgctttt 33350826  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 5934243 - 5934202
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccgggta 59  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  5934243 agcatgggtactccaaacatggaggagtaccggtaccgggta 5934202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 6818213 - 6818175
Alignment:
Q  21 atgggtactccaaacatggagaagtaccggtaccgggta 59  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6818213 atggatactccaaacatggagaagtaccggtaccgggta 6818175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 5934030 - 5933909
Alignment:
Q  234 taaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaatctttt----ttgttgatgttttatatcaacgtacatgtaccttcattt 329  Q
    ||||||||| ||  |||||||| |||||||||| |||||||||||||    | ||||    || || |||| ||||| ||| ||||  ||||||||||||    
T  5934030 taaaactctcaagtaacatgatgatagaagtgtagtaattcacttgattttttttttatttttttttatgtattataccaatgtacccgtaccttcattt 5933931  T
Q  330 tttaaaatttaccgtattacgt 351  Q
    |||||||||| |||||||||||    
T  5933930 tttaaaatttgccgtattacgt 5933909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 34244584 - 34244548
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtacc 54  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34244584 agcatgggtactccacacatggagaagtaccggtacc 34244548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 31001361 - 31001415
Alignment:
Q  297 atgttttatatcaacgtacatgtaccttcattttttaaaatttaccgtattacgt 351  Q
    |||||||||||||| |||| ||||||||| ||||| |||||||| | ||||||||    
T  31001361 atgttttatatcaaggtacctgtaccttcctttttaaaaatttatcatattacgt 31001415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 6817113 - 6817068
Alignment:
Q  247 caacatgataatagaagtgtggtaattcacttgaaaaatctttttt 292  Q
    |||||| || |||||| ||| |||||||||||||||||||||||||    
T  6817113 caacataatgatagaaatgtagtaattcacttgaaaaatctttttt 6817068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 111725 - 111684
Alignment:
Q  18 agcatgggtactccaaacatggagaagtaccggtaccgggta 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  111725 agcatgggtactccaaacatggagaagtaccggtaccaggta 111684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 348
Target Start/End: Complemental strand, 110343 - 110231
Alignment:
Q  234 taaaactctaaaacaacatgataatagaagtgtggtaattcacttgaaaaatcttttttgttgatgttttatatcaacgtacatgtaccttcatttttta 333  Q
    ||||| ||| || ||||||||| ||| |||||| ||| |||||||  ||  | ||| || ||||||||||||| || |||||  ||||||||||||||||    
T  110343 taaaaatctcaagcaacatgatgataaaagtgtagtatttcactt--aatttatttatttttgatgttttataccatcgtacccgtaccttcatttttta 110246  T
Q  334 aaatttaccgtatta 348  Q
    ||| || ||||||||    
T  110245 aaaattgccgtatta 110231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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