View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_high_4 (Length: 439)
Name: NF17220_high_4
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 19886943 - 19886747
Alignment:
| Q |
11 |
tactactgatgatggaaaaaggttaaaaaagaagacaagacaagaggatggttcatggaaaatggacaagaaagaaggacatggatcgaaatggacatca |
110 |
Q |
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| T |
19886943 |
tactactgatgatggaaaaaggttaaaaaagaagacaagacaagaggatggttcatggaaaatggacaagaaagaaggacatggatcgatatggacatca |
19886844 |
T |
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| Q |
111 |
atactgttggatggatggggcataaaattcaatannnnnnncttgtttgttacttcagattaatagtaattttattaattaagtcatctcatcacac |
207 |
Q |
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| T |
19886843 |
atactgttggatggatggtgcataaaattaattttttttttcttgtttgttacttcagattaatagtaattttattaattaagtcatctcatcacac |
19886747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 321 - 432
Target Start/End: Complemental strand, 19886643 - 19886532
Alignment:
| Q |
321 |
aaatgagaataagagacaagtagaatctaaattttggctataaaatgaaagggtgcatagagaagactcaggtcaatcttttcaaacaccatttcagctg |
420 |
Q |
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| T |
19886643 |
aaatgagaataagagacaagaagaatctaaattttggctgtaaaatgaaagggtgcatagagaagactcaggtcaatcttttcaaacaccatttcagctg |
19886544 |
T |
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| Q |
421 |
tcagctcctttg |
432 |
Q |
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| T |
19886543 |
tcaactcctttg |
19886532 |
T |
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