View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_high_5 (Length: 414)
Name: NF17220_high_5
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 52584255 - 52584639
Alignment:
| Q |
19 |
agattctccaccacaggttgattacaaggctcacgtgtctgatcttgaccaggcatgaagtaacttggattgatcataagaccttgatttaaggaacggt |
118 |
Q |
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| T |
52584255 |
agattctccaccacaggttgattacaaggctcacgtgtctgatcttgaccaggcatgaagtaacttggattgatcataagaccttgatttaaggaacggt |
52584354 |
T |
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| Q |
119 |
ttctgtattcatcaacaagcatgtgagagcctaaagaaagggataggccttgttgtgtctggtgattattctcgtttgctgcaccaagtagatccatcaa |
218 |
Q |
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| T |
52584355 |
ttctgtattcatcaacaagcatgtgagagcctaaagaaagggataggccttgttgtgtctggtgattattctcgtttgctgcaccaagtagatccatcaa |
52584454 |
T |
|
| Q |
219 |
atgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaagtgattcatgatatgcattgttgtttctcaaagaagat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584455 |
atgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaagtgattcatgatatgcattgttgtttctcaaagaagat |
52584554 |
T |
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| Q |
319 |
gaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagtttgacatcattaattgtagctagc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584555 |
gaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagtttgacatcattaattgtagctagc |
52584639 |
T |
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