View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_high_6 (Length: 405)
Name: NF17220_high_6
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 39756431 - 39756776
Alignment:
| Q |
14 |
atgaagaagagataatttattatagtcaaagatagagaaaagaaatcagtcaaatgcatgttatgttcaaaccaaccaaaccc-atacgtgtaaaaattt |
112 |
Q |
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| T |
39756431 |
atgaagaagagataatttattatagtcaaagatagagaaaagaaatcagtcaaatgcatgttatgttcaaaccaaccaaaccccatacgtgtaaaaattt |
39756530 |
T |
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| Q |
113 |
aaaacgccgcttttattgttcctttgactggtcaacgatatggatataatagtacaaatatatttattgtttttatcatcatttaatgatattaatgatg |
212 |
Q |
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| T |
39756531 |
aaaacgccgcttttattgttcctttgactggtcaacgatatggatataatagtacaaatatatttattgtttttatcatcatttaatgatattaatgatg |
39756630 |
T |
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| Q |
213 |
gattggagggtcacctcaataggaatttattccatagagaatagagatagagggagggaatggaaatgatttagacacgtctattttgtttttcatgtct |
312 |
Q |
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| T |
39756631 |
gattggagggtcacctcaataggaatttattccatagagaatagagatagagggagggaatggaaatgatttagacacgtctattttgtttttcatgtct |
39756730 |
T |
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| Q |
313 |
tctagttaattcatttatcatatgaggaccgtcacgacccattcctccc |
361 |
Q |
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| T |
39756731 |
tctagttaattcatttatcatatgaggac---cacgacccattcctccc |
39756776 |
T |
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