View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_low_10 (Length: 376)
Name: NF17220_low_10
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 8139395 - 8139052
Alignment:
| Q |
8 |
gagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaa |
107 |
Q |
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| T |
8139395 |
gagcagagacatcattccaaaaacagtgatattcaagcatgcattcagtaacaaagactaaa---------aaaaaaaatcaacagatgcgcttcaaaaa |
8139305 |
T |
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| Q |
108 |
cacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagattta |
207 |
Q |
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| T |
8139304 |
cacagattcatcattcatagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagattta |
8139205 |
T |
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| Q |
208 |
tacttaatgatcaagaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacatcattccaaagtcagcca |
307 |
Q |
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| T |
8139204 |
tacttaatgatcaagaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacataattccaaagtcagcca |
8139105 |
T |
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| Q |
308 |
tgtattaactgatagtgcatacat-aaacaattagatgagagccacagaaact |
359 |
Q |
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| T |
8139104 |
tgtattaactgatagtgcatacataaaacaattagatgagagccacagaaact |
8139052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 7499529 - 7499701
Alignment:
| Q |
8 |
gagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaa |
107 |
Q |
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| T |
7499529 |
gagcagaaacatcattccaaaaacagtgatgttcaagcatgcattcagtaacaaagactcaa--------aaaaaaaaatcaacagatgagcttcaaaa- |
7499619 |
T |
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| Q |
108 |
cacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttac |
189 |
Q |
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| T |
7499620 |
cacagattcatcattcatagaagtgatcatgattgcagaaataaatgataaagatttttagataaatgattaagatttttac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 242
Target Start/End: Original strand, 7502967 - 7503107
Alignment:
| Q |
107 |
acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa |
201 |
Q |
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| T |
7502967 |
acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag |
7503066 |
T |
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| Q |
202 |
gatttatacttaatgatcaagaaacataaaaaactgagaca |
242 |
Q |
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| T |
7503067 |
gatttttacttaatgatcaagaaacataaaaaactgggaca |
7503107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 7499722 - 7499787
Alignment:
| Q |
278 |
aaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacataaacaattagat |
343 |
Q |
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| T |
7499722 |
aaaactgagacatcattctaaaaccagccatgtattaacagatagtgcatatataaacaattagat |
7499787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 7502878 - 7502928
Alignment:
| Q |
14 |
agacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaaga |
64 |
Q |
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| T |
7502878 |
agacatcattccaaaaacagtgatatccaagcatgcaatcagtaacaaaga |
7502928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
| Q |
108 |
cacagattcatcattcatggaaatgatcatgattgcagaaat |
149 |
Q |
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| T |
7503119 |
cacaaattcatcattcatagaagtgatcatgattgcagaaat |
7503160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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