View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_low_13 (Length: 337)
Name: NF17220_low_13
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_low_13 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 43473831 - 43474149
Alignment:
| Q |
19 |
attctcatctgtgccccgcgtccttcactttcaaataaattaagtgaattcaatggttggttgtaggaaaaatgaagttgagaggaagaatatctgccct |
118 |
Q |
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| T |
43473831 |
attctcatctgtgccccgcgtccttcactttcaaataaattaagtgaattcaatggttggtagtaggaaaaatgaagttgagaggaagaatatctgccct |
43473930 |
T |
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| Q |
119 |
aatctccaactccaggtagatgaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagact |
218 |
Q |
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| T |
43473931 |
aatctccaactccagatagatgaatatagaatgaagttacatgatttctctcttgaagaagaagagaaacaaaccgttttcaacttcatcgccttagact |
43474030 |
T |
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| Q |
219 |
acaaaaataggcgtattcggagtcatggatttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgcctctttactctttgctcga |
318 |
Q |
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| T |
43474031 |
acaaaaataggcgtattcggagtcatggatttgcatggaattctagtcaaaagcgtctgcgccgttccatagcatacttgtctctttactctttgctcga |
43474130 |
T |
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| Q |
319 |
ccttttacgtctacagaat |
337 |
Q |
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| T |
43474131 |
ccttttacgtcgacagaat |
43474149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 35 - 329
Target Start/End: Complemental strand, 43566400 - 43566106
Alignment:
| Q |
35 |
cgcgtccttcactttcaaataaattaagtgaattcaatggttggttgtaggaaaaatgaagttgagaggaagaatatctgccctaatctccaactccagg |
134 |
Q |
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| T |
43566400 |
cgcgcccttcactttcaaacaaactcaatgaattcaatggttgatggtaagaagaataaagttgaggggaagaatatctgccccaatctccaatgtcaga |
43566301 |
T |
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| Q |
135 |
tagatgaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaataggcgtat |
234 |
Q |
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| T |
43566300 |
tagatgaatacagaatgaagttaaatgatttctcccttgaagaacaagagaaacaaaccgtttccaaattcatcgccttagactacaaaaataggcgtat |
43566201 |
T |
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| Q |
235 |
tcggagtcatggatttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgcctctttactctttgctcgaccttttacgtc |
329 |
Q |
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| T |
43566200 |
ttggaatagtggatttgcatggaattctggtcgaaagcatcggcgccgttccatagcatacttgtctctttactctttgcttgaccttttacgtc |
43566106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 43562311 - 43562258
Alignment:
| Q |
261 |
ctagtcaaaagcctcggcgccgttccataacatacttgcctctttactctttgc |
314 |
Q |
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| T |
43562311 |
ctagtcaaaagcatcgacgccattccatagcatacttgtctctttactctttgc |
43562258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 337
Target Start/End: Complemental strand, 43573129 - 43572940
Alignment:
| Q |
154 |
gttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaataggcgtattcg---gagtcatgga--- |
247 |
Q |
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| T |
43573129 |
gttacatgatttatcacttgaagaagaagtgaaaaagactgtttccaacttcatctctatcgactataaaaatagacgtattcgcaagagtaatggaata |
43573030 |
T |
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| Q |
248 |
tttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgcctctttactctttgctcgaccttttacgtctacagaat |
337 |
Q |
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| T |
43573029 |
tttgcattcaatattagtcgaaaccgtcagcgtcgttccatggcatactcgtctctttactctttgctcagccttttacgtcgacagaat |
43572940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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