View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17220_low_14 (Length: 323)

Name: NF17220_low_14
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17220_low_14
NF17220_low_14
[»] chr7 (1 HSPs)
chr7 (22-314)||(37936762-37937054)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 37936762 - 37937054
Alignment:
Q  22 ttgagatcatagcaaggaataagcaaaggcttaatcgtatctttcaacgtcaaagatttaccttcgctttcttttccttgaaaaactcgcttcaacaaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37936762 ttgagatcatagcaaggaataagcaaaggcttaatcgtatctttcaacgtcaaagatttaccttcgctttcttttccttgaaaaactcgcttcaacaaat 37936861  T
Q  122 tttcaatgctcttcgttgagaatctacggcgccggcggaaaacaccgacggatttcattttatagaattcatgattcctgtcagcaatgaaattcacagc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37936862 tttcaatgctcttcgttgagaatctacggcgccggcggaaaacaccgacggatttcattttatagaattcatgattcctgtcagcaatgaaattcacagc 37936961  T
Q  222 atctctagcagtatagagaggtctaccaaatccatcatcagctgtgatcattgcagcgagtattgcaccaatgccagtgccggtgatgatgtc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37936962 atctctagcagtatagagaggtctaccaaatccatcatcagctgtgatcattgcagcgagtattgcaccaatgccagtgccggtgatgatgtc 37937054  T

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