View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_low_16 (Length: 306)
Name: NF17220_low_16
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 12997704 - 12997990
Alignment:
| Q |
9 |
agcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgct |
108 |
Q |
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| T |
12997704 |
agcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtt |
12997802 |
T |
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| Q |
109 |
tcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12997803 |
tcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
12997902 |
T |
|
| Q |
209 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12997903 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
12997990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 13072344 - 13072630
Alignment:
| Q |
9 |
agcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgct |
108 |
Q |
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||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| | |
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| T |
13072344 |
agcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgtt |
13072442 |
T |
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| Q |
109 |
tcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
208 |
Q |
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| T |
13072443 |
tcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagta |
13072542 |
T |
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| Q |
209 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072543 |
accttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
13072630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 28139031 - 28139138
Alignment:
| Q |
175 |
tacttactttccccaccaaagttcattttcagtaaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgcc |
274 |
Q |
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| T |
28139031 |
tacttactttccccaccaaagctcattctcagtgagatcatccttgacgacacgcttatctcttggacaccgtccggtcttggcccccgaaagtgtagcc |
28139130 |
T |
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| Q |
275 |
attgctcc |
282 |
Q |
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| T |
28139131 |
aatgctcc |
28139138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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