View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_low_17 (Length: 301)
Name: NF17220_low_17
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_low_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 46550477 - 46550187
Alignment:
| Q |
9 |
gctcatattttggaagagaagactcgttgattatgacattaatgatagtgttttcgatgaagactcgtcgatgccactgggaagagcaccagtgtggcca |
108 |
Q |
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| T |
46550477 |
gctcatgttttggaagagaagactagttgattatgacattaatgatagtgttttcgatgaagactcgtcgatgccactgg-aagagcatcagtgtggcca |
46550379 |
T |
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| Q |
109 |
attttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttattatggctat |
208 |
Q |
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| T |
46550378 |
attttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttatgatggcttt |
46550279 |
T |
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| Q |
209 |
aaaggagacagcttccaaagtatctattgagtgtattgtttgtttctttctgcttccttttcttacgttgtttttggttcttatttgtatgca |
301 |
Q |
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| T |
46550278 |
aaaggagacagcttcc-aagtatctattgagtgtattgtttgtttctttctgcttccgtttcttacgttgtttttggttcttatttgtatgca |
46550187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 46535264 - 46535147
Alignment:
| Q |
101 |
tgtggccaattttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttatt |
200 |
Q |
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| T |
46535264 |
tgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaatggtgcactctttgttggagtttatg |
46535165 |
T |
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| Q |
201 |
atggctataaaggagaca |
218 |
Q |
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| T |
46535164 |
atggctacaaaggcgaca |
46535147 |
T |
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