View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_low_3 (Length: 499)
Name: NF17220_low_3
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 352 - 481
Target Start/End: Complemental strand, 42206768 - 42206639
Alignment:
| Q |
352 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaacatttatgttt |
451 |
Q |
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| T |
42206768 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaacatttatgttt |
42206669 |
T |
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| Q |
452 |
cgaaacattagcgtcaactgagcacggttc |
481 |
Q |
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| T |
42206668 |
cgaaacattagcgtcaactgagcacggttc |
42206639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 85 - 264
Target Start/End: Complemental strand, 42206965 - 42206780
Alignment:
| Q |
85 |
atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttac-aaatgtttatgaaacgatgtatgtgc |
183 |
Q |
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| T |
42206965 |
atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttacaaaatatttatgaaacgatgtatgtgc |
42206866 |
T |
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| Q |
184 |
atcaattcctaccctcaaaattga-----tgttacaaaattcagatgaatgtcactgcaagagtttttgatgttacaaaattgaag |
264 |
Q |
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| T |
42206865 |
atcaattcctaccctcaaaattgaacgagggacccaacattcagatgaatgtcactgcaagattttttgatgttacaaaattgaag |
42206780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 42207787 - 42207742
Alignment:
| Q |
331 |
tttctttctttcaagcagaagattgaatgttgttgaataatcaaga |
376 |
Q |
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| T |
42207787 |
tttctttctttcaagcagaagattgaatgttcttgaataatcaaga |
42207742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 42207989 - 42207933
Alignment:
| Q |
259 |
ttgaagcagaagattgaatgttcctgaataattaagaactagaaaacaggtaaccca |
315 |
Q |
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| T |
42207989 |
ttgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaaccca |
42207933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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