View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17220_low_8 (Length: 386)
Name: NF17220_low_8
Description: NF17220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17220_low_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 158 - 386
Target Start/End: Original strand, 32920136 - 32920363
Alignment:
| Q |
158 |
cctaggctctagggaagaaagtttccatggcgtcgttcgtaagtagggttaggaggtcgcttggaggagtaggatgggtagaaaaatcctcattagaaga |
257 |
Q |
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| T |
32920136 |
cctaggctctagggaagaaagtttccatggcgtcgttcgcaagtagggttaggatgtcgcttggaggagtaggatgggtagaaaaatcctcattagaa-a |
32920234 |
T |
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| Q |
258 |
agctcctaatttagctatgaagtcaacacattggtttccttctatgagacaatgctgaatagagaaatttcttaaagatagaagagctctgatatccgat |
357 |
Q |
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| T |
32920235 |
agctcctaatttagccatgaagtcaacacattggtttccttctatgagacaatgctgaatagagaaatttcttgaagatagaagagctctgatatccgat |
32920334 |
T |
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| Q |
358 |
taagaaaacataggcatgatactttgaag |
386 |
Q |
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| T |
32920335 |
taagacaacataggcatgatacttagaag |
32920363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 32919974 - 32920052
Alignment:
| Q |
1 |
aagtgttgtgtgacacatcagaatatcaataacatgacataatttctattacgttgcaaaaaattgattagatgtcaac |
79 |
Q |
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| T |
32919974 |
aagtgttgtgtgacacatcagaatatcaataacatgacataatttctattacgttgcaaaaaattgattagatgtcaac |
32920052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 45921076 - 45921194
Alignment:
| Q |
211 |
aggtcgcttggaggagtaggatgggtagaaaaatcctcattagaagaagctcctaatttagctatgaagtcaacacattggtttccttctatgagacaat |
310 |
Q |
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| T |
45921076 |
aggtcgcttggaggagaaacatgagtagaaaattcctcattcgaggtggttccgagcttagttaagaagtcagtacattgatttccttctctgagacaat |
45921175 |
T |
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| Q |
311 |
gctgaatagagaaatttct |
329 |
Q |
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| T |
45921176 |
gatgaatagagaagtttct |
45921194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 50234543 - 50234596
Alignment:
| Q |
246 |
ctcattagaagaagctcctaatttagctatgaagtcaacacattggtttccttc |
299 |
Q |
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| T |
50234543 |
ctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttc |
50234596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 11752277 - 11752106
Alignment:
| Q |
158 |
cctaggctctagggaagaaagtttccatggcgtcgttcgtaagtagggttaggaggtcgcttggaggagtaggatgggtagaaaaatcctcattagaaga |
257 |
Q |
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| T |
11752277 |
cctaggctctagggaagtaggttcccatggcatcgatcctgatcaaagataggaggtcatttggaggagtaggatgagtggaaaaatcgtcattcga-ga |
11752179 |
T |
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| Q |
258 |
agctcctaatttagctatgaagtcaacacattggtttccttctatgagacaatgctgaatagagaaatttctt |
330 |
Q |
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| T |
11752178 |
tgctccaaatttaaccatgaagtcagcacattgatttccttctctcggacaatgatgaatcgagaaatttctt |
11752106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 26701678 - 26701754
Alignment:
| Q |
250 |
ttagaagaagctcctaatttagctatgaagtcaacacattggtttccttctatgagacaatgctgaatagagaaatt |
326 |
Q |
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| T |
26701678 |
ttagaggaagcttcgaattttgccatgaaatcagcacattggtttccttctctgaggcaatgttggatagagaaatt |
26701754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 11052923 - 11052847
Alignment:
| Q |
250 |
ttagaagaagctcctaatttagctatgaagtcaacacattggtttccttctatgagacaatgctgaatagagaaatt |
326 |
Q |
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| T |
11052923 |
ttagaagaagctcctaattttgccatgaaatcagcgcattgttttccttctctgaggcaatgttggatagagaaatt |
11052847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 34361596 - 34361520
Alignment:
| Q |
250 |
ttagaagaagctcctaatttagctatgaagtcaacacattggtttccttctatgagacaatgctgaatagagaaatt |
326 |
Q |
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| T |
34361596 |
ttagaggaagctccgaattttgccatgaaatcagcacattggtttccttccctgaggcaatgttggatagagaaatt |
34361520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 1448398 - 1448346
Alignment:
| Q |
247 |
tcattagaagaagctcctaatttagctatgaagtcaacacattggtttccttc |
299 |
Q |
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| T |
1448398 |
tcattagacgaagctcccaattttgccatgaaatcaacgcattggtttccttc |
1448346 |
T |
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