View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17221_low_2 (Length: 455)

Name: NF17221_low_2
Description: NF17221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17221_low_2
NF17221_low_2
[»] chr7 (2 HSPs)
chr7 (23-419)||(25998229-25998636)
chr7 (155-222)||(47762051-47762118)
[»] chr5 (1 HSPs)
chr5 (155-222)||(10548170-10548237)
[»] chr1 (6 HSPs)
chr1 (155-221)||(11398309-11398375)
chr1 (155-220)||(18136414-18136479)
chr1 (155-220)||(52946193-52946258)
chr1 (155-220)||(31230370-31230435)
chr1 (155-220)||(52935150-52935215)
chr1 (155-220)||(52942785-52942850)
[»] chr4 (1 HSPs)
chr4 (155-220)||(40225511-40225576)
[»] scaffold0590 (2 HSPs)
scaffold0590 (158-221)||(7735-7798)
scaffold0590 (162-220)||(5063-5121)
[»] chr2 (1 HSPs)
chr2 (155-220)||(42735260-42735327)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 419
Target Start/End: Original strand, 25998229 - 25998636
Alignment:
Q  23 tgataagaaatatgtcacgccatttggtttggcgtgacattccgttaaatgacnnnnnnnnn----------catttgaaactaggacatttgagtaaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||    
T  25998229 tgataagaaatatgtcacgccatttggtttggcgtgacattccgttaaatgacaaaaaaaaaaaaaaaaaaacatttgaaactaggacatttgagtaaat 25998328  T
Q  113 aaatatttaactaggtttgatatgtaannnnnnnngccagggtcatatttataagggttcatatttctatttttcataatgcactttttaactctaagac 212  Q
    ||||||||||||||||| |||||||||        | |||||||||||||||| ||||  ||||| ||||||| |||||||||  || |||||||| |||    
T  25998329 aaatatttaactaggttcgatatgtaattttttttgtcagggtcatatttatacgggtctatattcctattttccataatgcatcttctaactctatgac 25998428  T
Q  213 tcattacagttatcagcaattgtttcagtgtaatttggtattgtagaaatnnnnnnn-gattcctaaaggattagagtcatttctgactcttgttcaatt 311  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||    
T  25998429 tcattgcagttatcagcaattgtttcagggtaatttggtattgtagaaataaaaaaaagattcctaaaggattagagtcatttctgacacttgttcaatt 25998528  T
Q  312 gttgattttattatcttaaaggatttcaatatcaaaattaatcatcctaagccaaccataatcaaacaagtcatttggcaacttacccttcacagttgga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  25998529 gttgattttattatcttaaaggatttcaatatcaaaattaatcatcctaagccaaccataatcaaagaagtcatatggcaacttacccttcacagttgga 25998628  T
Q  412 ccaaatgc 419  Q
    ||||||||    
T  25998629 ccaaatgc 25998636  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 47762118 - 47762051
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattacagt 222  Q
    |||||||||||||||| |||||| ||||||| |||||||| | || ||||||||||||||||||||||    
T  47762118 tcatatttataagggtccatattcctattttccataatgccccttctaactctaagactcattacagt 47762051  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 10548237 - 10548170
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattacagt 222  Q
    |||||||||||| ||| |||||| ||||||| |||||||| | || ||||||||||||||||||||||    
T  10548237 tcatatttataaaggtccatattcctattttccataatgccccttctaactctaagactcattacagt 10548170  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 11398309 - 11398375
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattacag 221  Q
    |||||||||||||||| |||||| ||||||| ||||||||   || |||||||||||||||||||||    
T  11398309 tcatatttataagggtccatattcctattttccataatgccacttctaactctaagactcattacag 11398375  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 18136479 - 18136414
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    |||||||||||||||| |||||| ||||||  |||||||| | || ||||||||||||||||||||    
T  18136479 tcatatttataagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 18136414  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 52946258 - 52946193
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    |||||||||||||||| |||||| ||||||  |||||||| | || ||||||||||||||||||||    
T  52946258 tcatatttataagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 52946193  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 31230370 - 31230435
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    |||||||||||||||| |||||| ||||||  ||||| || | || ||||||||||||||||||||    
T  31230370 tcatatttataagggtccatattcctatttcccataacgccccttctaactctaagactcattaca 31230435  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 52935215 - 52935150
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    |||||||||||||||| |||||| ||||||  |||||||| | || ||||| | ||||||||||||    
T  52935215 tcatatttataagggtccatattcctatttcccataatgccccttctaacttttagactcattaca 52935150  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 52942850 - 52942785
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    |||||||||||||||| |||||| ||||||  |||||||| | || ||||| | ||||||||||||    
T  52942850 tcatatttataagggtccatattcctatttcccataatgccccttctaacttttagactcattaca 52942785  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 40225511 - 40225576
Alignment:
Q  155 tcatatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    |||||||||| ||||| |||||| ||||||  |||||||| | || ||||||||||||||||||||    
T  40225511 tcatatttattagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 40225576  T

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Target: scaffold0590 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 7735 - 7798
Alignment:
Q  158 tatttataagggttcatatttctatttttcataatgcactttttaactctaagactcattacag 221  Q
    |||||||||||||||||||| ||||||||  |||| |  ||| || ||||||||||||||||||    
T  7735 tatttataagggttcatattcctattttttttaatactttttctagctctaagactcattacag 7798  T

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Target: scaffold0590; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 5063 - 5121
Alignment:
Q  162 tataagggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    ||||||||| |||||| ||||||  |||||||| | || ||||||||||||||||||||    
T  5063 tataagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 5121  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 42735327 - 42735260
Alignment:
Q  155 tcatatttataag--ggttcatatttctatttttcataatgcactttttaactctaagactcattaca 220  Q
    |||||||||||||  ||| |||||| ||||||  |||||||| | || ||||||||||||||||||||    
T  42735327 tcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 42735260  T

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