View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17221_low_3 (Length: 381)
Name: NF17221_low_3
Description: NF17221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17221_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 22325265 - 22325469
Alignment:
| Q |
1 |
catcaatatagattgttgtgtctttatctcctcgaatcaatggaccatcggatgaaaatttatatcgcttaaatcctttagcgcggaaagattctccatt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22325265 |
catcaatatagatttttgtgtctttatctcctcgaatcaatggatcatcggatgataatttatatcgcttaaatccattagcgcggaaagattctccatt |
22325364 |
T |
|
| Q |
101 |
cttcattcaaaattttaaaacgaaaatagtaaataacaactcagtatgtaa-taagttatgttatgtctccatcagttgaaacaatataaatatgtgtac |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22325365 |
cttcattcaaaatttt-aaacgaaaatagtaaataacaactcagtatgtaactaagttatgttatgtctccatcagttgaaacaatataaatatgtgtac |
22325463 |
T |
|
| Q |
200 |
ttacag |
205 |
Q |
| |
|
|||||| |
|
|
| T |
22325464 |
ttacag |
22325469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 212 - 363
Target Start/End: Original strand, 22325916 - 22326067
Alignment:
| Q |
212 |
tatttataattaattaaatcacctgacatggctagaatttgactttgttttccgatattgtacaaaaccctaatttgaaaagatgcaatggggggattta |
311 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22325916 |
tatttataattaatttaatcacctgacatggctagaattcgactttgttttccgatattgtccaaaaccctaatttgaaaagatgcaatggggggattta |
22326015 |
T |
|
| Q |
312 |
aaccacccacaattttataattgggatacaatgagatattagaagcacccca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22326016 |
aaccacccacaattttataattgggatacaatgagatattagaagcacccca |
22326067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University