View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17221_low_4 (Length: 315)

Name: NF17221_low_4
Description: NF17221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17221_low_4
NF17221_low_4
[»] chr5 (7 HSPs)
chr5 (12-299)||(1601512-1601799)
chr5 (12-194)||(8533955-8534151)
chr5 (12-190)||(8545524-8545720)
chr5 (12-170)||(8527388-8527560)
chr5 (35-113)||(9001906-9001984)
chr5 (133-172)||(8677043-8677082)
chr5 (35-76)||(8640110-8640151)
[»] chr7 (1 HSPs)
chr7 (12-194)||(48363144-48363342)
[»] chr1 (2 HSPs)
chr1 (52-194)||(26325082-26325229)
chr1 (34-75)||(5129472-5129513)
[»] chr4 (2 HSPs)
chr4 (12-134)||(9441772-9441894)
chr4 (133-170)||(9441722-9441759)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 1601512 - 1601799
Alignment:
Q  12 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgagga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1601512 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 1601611  T
Q  112 gctttgctgaatagtttagatttgaatttcaattttggtggcatgatattgaaccctttacatccatttgtcacattcactttctcattgtcctaaatca 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601612 gctttgctgaatagtttagatttgaatttcaattttgggggcatgatattgaaccctttacatccatttgtcacattcactttctcattgtcctaaatca 1601711  T
Q  212 atccgtttggtgctatgatggctatttctatctatatttccggttcataggatctatagtcaaaaggtgtggcaaatgatttggaatg 299  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1601712 atccttttggtgctatgatggctatttctatctatatttccggttcataggatctatagtcaaaaggtgtggcaaatgatttcgaatg 1601799  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 8534151 - 8533955
Alignment:
Q  12 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgagga 111  Q
    |||||||||  |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||  |||||| |    
T  8534151 tcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaagcctgaattataatgaattatctatttgagta 8534052  T
Q  112 gctttgctgaatagtttagat--------------ttgaatttcaattttggtggcatgatattgaaccctttacatccatttgtcacattcacttt 194  Q
    |||||| ||||| | ||||||              |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  8534051 gctttgatgaattgattagatttaaaatttaatgattgaatttcaattttggtggcatgatattgaaccctttacatccttttgtcacgttcacttt 8533955  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 8545524 - 8545720
Alignment:
Q  12 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgagga 111  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||   ||||||||    
T  8545524 tcatcaatcctgatttcctttattcttcgtctttaactgctccttgaaaagagtttctgcatccctgagcgttaattataatgaattattgatttgagga 8545623  T
Q  112 gctttgctgaatagtttagattt---------------gaatttcaattttggtggcatg---atattgaaccctttacatccatttgtcacattca 190  Q
    |||||| ||||||||||||||||               ||||||||||||||||||||||   |||||||| ||||||||||| |||||||||||||    
T  8545624 gctttgatgaatagtttagatttaaatttttaatgattgaatttcaattttggtggcatgataatattgaatcctttacatccttttgtcacattca 8545720  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 8527560 - 8527388
Alignment:
Q  12 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgagga 111  Q
    |||||||||  |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| || | | |||||||||||||||||  |||||| |    
T  8527560 tcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagta 8527461  T
Q  112 gctttgctgaatagtttagat--------------ttgaatttcaattttggtggcatgatattgaacccttt 170  Q
    |||| | ||||| | ||||||              ||||||||||||||||||||||||||||||||||||||    
T  8527460 gcttcgatgaatcgattagatttaaaatttaatgattgaatttcaattttggtggcatgatattgaacccttt 8527388  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 9001984 - 9001906
Alignment:
Q  35 tcttagtctttaactgctccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgaggagc 113  Q
    ||||||||||||||||||| |||||||| |||| |||||||| ||| || || || ||||||  |||| ||||||||||    
T  9001984 tcttagtctttaactgctcgttgaaaagtgtttttgaatccctaagggtgaaatacaatgaacgatcaatttgaggagc 9001906  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 8677082 - 8677043
Alignment:
Q  133 ttgaatttcaattttggtggcatgatattgaaccctttac 172  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  8677082 ttgaatttcaatttttttggcatgatattgaaccctttac 8677043  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 8640151 - 8640110
Alignment:
Q  35 tcttagtctttaactgctccttgaaaagggtttctgaatccc 76  Q
    |||| |||||||||||||||||||||| ||| ||||||||||    
T  8640151 tcttggtctttaactgctccttgaaaaaggtctctgaatccc 8640110  T

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Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 48363144 - 48363342
Alignment:
Q  12 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgagga 111  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||| ||||||||    
T  48363144 tcatcaatcctgctttccttgattcttaatctttaactgctccttgaaaagggtttctgaatccctaaacgttaatcataatgagttatcaatttgagga 48363243  T
Q  112 gctttgctgaatagtttagat---------------ttgaatttcaattttggtggcatgatattgaaccc-tttacatccatttgtcacattcacttt 194  Q
    |||||| ||||||||||||||               ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  48363244 gctttgatgaatagtttagatttaaatttttaatgattgaatttcaattttggtggcatgatattgaacccttttacatccttttgtcacgttcacttt 48363342  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 26325082 - 26325229
Alignment:
Q  52 tccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgaggagctttgctgaatagtttagattt-----gaatttcaattt 146  Q
    ||||||||||||||||||||||||| |||| | ||||||||||| |||||  |||||| ||||| | ||||| | ||||||||     ||||||||||||    
T  26325082 tccttgaaaagggtttctgaatccctaagcctgaattataatgatttatctatttgagtagcttcgatgaattgattagatttaaattgaatttcaattt 26325181  T
Q  147 tggtggcatgatattgaaccctttacatccatttgtcacattcacttt 194  Q
    |||||||||| ||||||||||||||||||| | |||||  ||||||||    
T  26325182 tggtggcatggtattgaaccctttacatccttctgtcatgttcacttt 26325229  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 5129513 - 5129472
Alignment:
Q  34 ttcttagtctttaactgctccttgaaaagggtttctgaatcc 75  Q
    ||||||||||||| ||||||||||||||| |||| |||||||    
T  5129513 ttcttagtctttatctgctccttgaaaagcgtttttgaatcc 5129472  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 9441894 - 9441772
Alignment:
Q  12 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccccaagcgttaattataatgaattatcagtttgagga 111  Q
    |||||||||  |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| || | | |||||||||||||||||  |||||| |    
T  9441894 tcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagta 9441795  T
Q  112 gctttgctgaatagtttagattt 134  Q
    |||| | ||||| | ||||||||    
T  9441794 gcttcgatgaatcgattagattt 9441772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 9441759 - 9441722
Alignment:
Q  133 ttgaatttcaattttggtggcatgatattgaacccttt 170  Q
    |||||||| |||||||||||||||||||||||||||||    
T  9441759 ttgaatttaaattttggtggcatgatattgaacccttt 9441722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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