View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17221_low_6 (Length: 212)
Name: NF17221_low_6
Description: NF17221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17221_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 20527403 - 20527231
Alignment:
| Q |
17 |
cacagaggtacaatgcttgaccatatttttatttatttaagagtagttataaatctttgtatatattggttgtatgaaaataaataatacatattcatcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20527403 |
cacagaggtacaatgcttgaccatatttttattta----agagtagttatgaatctttgtatatattggttgtatgaaaataa-taatacatattcatcc |
20527309 |
T |
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| Q |
117 |
tgtaggaacattcttggagaagaattggagcagttggatatcaatgagcttgagcagatagaacgtcaggtagactct |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20527308 |
tgtaggaacattcttggagaagaattggagcagttggatatcaatgagcttgagcagatagaacgtcaggtagactct |
20527231 |
T |
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