View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_high_10 (Length: 470)
Name: NF17222_high_10
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 104 - 452
Target Start/End: Original strand, 36675229 - 36675577
Alignment:
| Q |
104 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
203 |
Q |
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| T |
36675229 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36675328 |
T |
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| Q |
204 |
aaaattaacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaac |
303 |
Q |
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| T |
36675329 |
aaaaataacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaac |
36675428 |
T |
|
| Q |
304 |
aatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgac |
403 |
Q |
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| T |
36675429 |
aatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgac |
36675528 |
T |
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| Q |
404 |
catcaatggtgcaggatgtgtggttgagatcatctatatcacactcttt |
452 |
Q |
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| T |
36675529 |
catcaatggtgcaggatgtgtggttgagatcatctatatcacactcttt |
36675577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 104 - 452
Target Start/End: Original strand, 36685311 - 36685659
Alignment:
| Q |
104 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
203 |
Q |
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| T |
36685311 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36685410 |
T |
|
| Q |
204 |
aaaattaacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaac |
303 |
Q |
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| T |
36685411 |
aaaaataacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaac |
36685510 |
T |
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| Q |
304 |
aatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgac |
403 |
Q |
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| T |
36685511 |
aatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgac |
36685610 |
T |
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| Q |
404 |
catcaatggtgcaggatgtgtggttgagatcatctatatcacactcttt |
452 |
Q |
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| T |
36685611 |
catcaatggtgcaggatgtgtggttgagatcatctatatcacactcttt |
36685659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36675130 - 36675179
Alignment:
| Q |
1 |
tactaatttgctttttaagctttcattaaaaacatatatatgtacttcaggaat |
54 |
Q |
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| T |
36675130 |
tactaatttgctttttaagctttcattaaaaacatat----gtacttcaggaat |
36675179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 451
Target Start/End: Complemental strand, 42224459 - 42224268
Alignment:
| Q |
260 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctc |
359 |
Q |
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||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| || | | ||||||||||| ||||| || |
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| T |
42224459 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacacta |
42224360 |
T |
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| Q |
360 |
tacgggttgccaatggtgcaccctcacagtttccttgtggtgaccatcaatggtgcaggatgtgtggttgagatcatctatatcacactctt |
451 |
Q |
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||||| |||| ||||||||||| |||| | || ||||| |||||||| || |||| |||||| |||||||||| ||| |||| ||||| |
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| T |
42224359 |
tacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgtcacgctctt |
42224268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 25991706 - 25991738
Alignment:
| Q |
196 |
ttaacgtaaaaattaacaatactaacatttgtt |
228 |
Q |
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| T |
25991706 |
ttaacgtaaaaattaacaatactaacatttgtt |
25991738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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