View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_high_18 (Length: 394)
Name: NF17222_high_18
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 60 - 382
Target Start/End: Complemental strand, 12349965 - 12349644
Alignment:
| Q |
60 |
caatcacacgctatcatttcctagaagatcatgtacaacatgtttagtacatagcctccactccaatggagctacacccatgcccattaagatacaccag |
159 |
Q |
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| T |
12349965 |
caatcacacgttatcatttcctagaagatcatgtacaacatgtttagtacatagcctccactccaatggagctacaccgatgcccattaagatacaccag |
12349866 |
T |
|
| Q |
160 |
ccacatactcactcttcactcttgccatactacaactctagagagactaaaagtttgttttggtatgagctttactatacacaaatgaaaggctcaaatt |
259 |
Q |
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| T |
12349865 |
tcacatactcactcttcactcttgccatactacaactctagagagactaaaagtttgttttggtatgagctttactatacacaaatgaaaggctcaaatt |
12349766 |
T |
|
| Q |
260 |
acacaacaaaattacatacaaaataacaccatcaatctccttatgcaattaaagcatatgtatcatcgatgaaagaaacagaagcttgccatatctgaat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12349765 |
acacaacaaaattacatacaaaataacaccatcaatctccttatgcaatt-aagcatatgtatcatcgatgaaagaaacagaagcttgccatatctgaat |
12349667 |
T |
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| Q |
360 |
aattagctcctccatgaacccta |
382 |
Q |
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||||||||||||||||||||||| |
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| T |
12349666 |
aattagctcctccatgaacccta |
12349644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 12350754 - 12350703
Alignment:
| Q |
16 |
atatcatatattaccaaaatatcttagttatatcataattggagcaatcaca |
67 |
Q |
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| T |
12350754 |
atatcatatattaccaaaatatcttagttatatcataactggagcaatcaca |
12350703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 25283639 - 25283286
Alignment:
| Q |
16 |
atatcatatattaccaaaatatcttagttatatcataattggagcaatcacacgctatcatttcctagaagatcatgtacaacatgtttagtacatagcc |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25283639 |
atatcatatattatcaaaatatcttagttatatcataattggagcaatcacacgctatcatttcctagaagatcatgtacaacatgtttagtacatagcc |
25283540 |
T |
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| Q |
116 |
tccactccaatggagctacacccatgcccattaagatacaccagccacatactcactcttcactcttgccatactacaactctagagagactaaaagttt |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25283539 |
tccactccaatggagctacactcatgcccattaagatacaccagtcacatactcactcttcactcttgccatactacaactctagagagactaaaagttt |
25283440 |
T |
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| Q |
216 |
gttttggtatgagctttactatacacaaatgaaaggctcaaattacacaacaaaattacatacaaaataacaccatcaatctccttatgcaattaaagca |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
25283439 |
gttttgttatgagctttactatacacaaatgaaaggctcaaattacacaaca------------aaataacaccatcaatctccttatgcaatt-aagca |
25283353 |
T |
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| Q |
316 |
tatgtatcatcgatgaaagaaacagaagcttgccatatctgaataattagctcctccatgaacccta |
382 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25283352 |
tatgtatcatcgatgaaagaaacaaaagcttgccatatctgaataattagctcctccatgaacccta |
25283286 |
T |
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