View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_high_20 (Length: 367)
Name: NF17222_high_20
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 17431652 - 17431299
Alignment:
| Q |
1 |
tactatggcaacagatattattcgtagtcagcaaggttaacaaagatttagtagtgaacatattcaaatgcacaccaaacctacagctcaaaatgtaatt |
100 |
Q |
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| T |
17431652 |
tactatggcaacagatattattcgtagtcagcaaggttgacaaagatttagtagtgaacatattcaaatgcacaccaaacctacagctcaaaatgtaatt |
17431553 |
T |
|
| Q |
101 |
tcttgttgaaagtgcatttgagaacctgttactgcacaataaagcttgatcatagatttaactagggttttaaattgcataatgcatgtttatcaatttg |
200 |
Q |
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| T |
17431552 |
tcttgttgaaagtgcatttgagaacctgttactgcacaataaagcttgatcatagatttaactagggttttaaattgcataatgcatgtttatcaatttg |
17431453 |
T |
|
| Q |
201 |
aaattcaaatcatgaaccaaaaacacctattttctgaatcatgaatcaaaccttttgaagaatataaggtacataatcaactaaaaatatgacatttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17431452 |
aaattcaaatcatgaaccaaaaacacctattttctgaatcatgaatcaaaccttttgaagaatataaggtacataatcaactaaaaatatgacatttcaa |
17431353 |
T |
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| Q |
301 |
aataaattaatattcatgcggcaattcatgtcccaaaaaatcaattagtaccct |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17431352 |
aataaattaatattcatgcggcaattcatgtcccaaaaaatcaattagtaccct |
17431299 |
T |
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