View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_high_23 (Length: 338)
Name: NF17222_high_23
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 40961632 - 40961330
Alignment:
| Q |
13 |
aatattttgatttatttcttatatttcacaagaaagaaaaatgccttgaacctgattacctgaaacaagaacatcaaacctccaacaccagcctttagca |
112 |
Q |
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| T |
40961632 |
aatattttgatttatttcttatatttcacaagaaagaaaaatgccttgaacctgattacctgaaacaagaacatcaaacctccaacaccagcctttagca |
40961533 |
T |
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| Q |
113 |
gggaagttgggcgtcacagtaacattctatgtttaatcatgtatattcttgtcgtcagattaagactaaaataatttaacacctagtataagttagcatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40961532 |
gggaagttgggcgtcacagtaacattctatgtttaatcatatatattcttgtcgtcagattaagactaaaataatttaacacctagtataagttagcatt |
40961433 |
T |
|
| Q |
213 |
agttttcgcaaattccaactagaagagagcttaactatacagaaaactttgctactagtaccatgaaaacaaaaatgacaaccaaaacacagaatattcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40961432 |
agttttcgcaaattccaactagaagagagcttaactatacagaaaactttgctactagtatcatgaaaacaaaaatgacaaccaaaacacagaatattcc |
40961333 |
T |
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| Q |
313 |
tcc |
315 |
Q |
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||| |
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| T |
40961332 |
tcc |
40961330 |
T |
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