View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17222_high_30 (Length: 306)

Name: NF17222_high_30
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17222_high_30
NF17222_high_30
[»] chr5 (9 HSPs)
chr5 (20-291)||(1601252-1601525)
chr5 (20-149)||(8545406-8545537)
chr5 (128-291)||(8527640-8527805)
chr5 (228-291)||(15618506-15618569)
chr5 (25-82)||(8534143-8534200)
chr5 (133-196)||(8534236-8534301)
chr5 (134-207)||(9075530-9075604)
chr5 (135-196)||(8643305-8643367)
chr5 (25-73)||(8527552-8527600)
[»] chr7 (1 HSPs)
chr7 (22-291)||(48362889-48363155)
[»] chr4 (2 HSPs)
chr4 (256-291)||(9441937-9441972)
chr4 (25-74)||(9441886-9441935)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 1601525 - 1601252
Alignment:
Q  20 atcaggattgatgaagtaaaacacata--gcagatcgggaaacagaacgaaatagcttagcaatatagtcaatcattttctaaaccaggccaacaagata 117  Q
    |||||||||||||||||||||||||||  | |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  1601525 atcaggattgatgaagtaaaacacatataggagatcgagaaacagaacgaaatagccgagcaatatagtcaatcattttctaaaccaggccaacaagata 1601426  T
Q  118 actggccagtcttacagcatagataatgattagcgaacatctagattaaagtttacaaaaagacatcatttgcatcctagaaccagatttgaannnnnnn 217  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  1601425 actggccagtcttacagcatagataatgattagtgaacatctagattaaagtttacaaaaagacatcatttgcatcctagaaccagatttgaattttttt 1601326  T
Q  218 ncaaaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttctt 291  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601325 tcaaaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttctt 1601252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 8545537 - 8545406
Alignment:
Q  20 atcaggattgatgaagtaaaacacata--gcagatcgggaaacagaacgaaatagcttagcaatatagtcaatcattttctaaaccaggccaacaagata 117  Q
    |||||||||||||||||||||||||||  | |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  8545537 atcaggattgatgaagtaaaacacatataggagatcgggaaacagaatgaaatagctgagcaatatagtcaatcgttttctaaaccaagccaacaagata 8545438  T
Q  118 actggccagtcttacagcatagataatgatta 149  Q
    || ||||| |||  ||||||||| ||||||||    
T  8545437 acaggccaatctcgcagcatagacaatgatta 8545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 128 - 291
Target Start/End: Original strand, 8527640 - 8527805
Alignment:
Q  128 cttacagcatagataatgattagcgaacatctagattaaagtttacaaaaa--gacatcatttgcatcctagaaccagatttgaannnnnnnncaaaaat 225  Q
    |||| |||| ||||||||||||  |||||||||||||||| ||||||||||  ||||||||||||||| || ||  ||||||| |          |||||    
T  8527640 cttaaagcacagataatgattaatgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagatttgtagttttttttcaaaat 8527739  T
Q  226 cgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttctt 291  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527740 cacaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttctt 8527805  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 15618506 - 15618569
Alignment:
Q  228 caactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttctt 291  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  15618506 caactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattctttctt 15618569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 8534143 - 8534200
Alignment:
Q  25 gattgatgaagtaaaacacatagcagatcgggaaacagaacgaaatagcttagcaata 82  Q
    ||||||||||| ||||||||||| ||||| |||||||||| ||||||||| |||||||    
T  8534143 gattgatgaagaaaaacacataggagatcaggaaacagaatgaaatagctgagcaata 8534200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 8534236 - 8534301
Alignment:
Q  133 agcatagataatgattagcgaacatctagattaaagttt--acaaaaagacatcatttgcatccta 196  Q
    |||||||||||||||||  |||||||||||||||| |||  | ||||| |||||||||||||||||    
T  8534236 agcatagataatgattaatgaacatctagattaaatttttcaaaaaaatacatcatttgcatccta 8534301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 9075604 - 9075530
Alignment:
Q  134 gcatagataatgattagcgaacatctagattaaagtttac-aaaaagacatcatttgcatcctagaaccagattt 207  Q
    |||||||||||||| |  |||| |||||||||||||| || |||||| |||||||||||||||| ||| ||||||    
T  9075604 gcatagataatgataaatgaacctctagattaaagttaacaaaaaagccatcatttgcatcctaaaacgagattt 9075530  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 8643305 - 8643367
Alignment:
Q  135 catagataatgattagcgaacatctagattaaagtttacaaaa-agacatcatttgcatccta 196  Q
    ||||||| || ||||  ||||||||  |||||||||||||||| |||||||||||||||||||    
T  8643305 catagatgataattactgaacatctgaattaaagtttacaaaaaagacatcatttgcatccta 8643367  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 8527552 - 8527600
Alignment:
Q  25 gattgatgaagtaaaacacatagcagatcgggaaacagaacgaaatagc 73  Q
    ||||||||||| ||| ||||||| ||||| |||||||||| ||||||||    
T  8527552 gattgatgaagaaaagcacataggagatcaggaaacagaatgaaatagc 8527600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 22 - 291
Target Start/End: Complemental strand, 48363155 - 48362889
Alignment:
Q  22 caggattgatgaagtaaaacacat--agcagatcgggaaacagaacgaaatagcttagcaatatagtcaatcattttctaaaccaggccaacaagataac 119  Q
    ||||||||||||||||||||||||  || || ||| ||||||||| ||||||||| |||||||   |||||| |||||||||||  ||||||||||||||    
T  48363155 caggattgatgaagtaaaacacatctaggaggtcgagaaacagaatgaaatagctgagcaataa--tcaatctttttctaaacccagccaacaagataac 48363058  T
Q  120 tggccagtcttacagcatagataatgattagcgaacatctagattaaagtttacaaaaagacatcatttgcatcctagaaccagatttgaannnnnnnnc 219  Q
       ||||||||  ||||||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||| | | | | |        |    
T  48363057 ataccagtcttgtagcatagataacgattaacgaacatctagattaaagttt--aaaaagacatcatttgcatcctagaacgaaaatagta-tttttttc 48362961  T
Q  220 aaaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttctt 291  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  48362960 aaaaatcacaactagccaaatcataacttgtgatttaacataaccctgcccagtgtatggaaattccctctt 48362889  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 9441937 - 9441972
Alignment:
Q  256 aacataaccctgcctagtgtatggaaattccttctt 291  Q
    ||||||||||||||||||||||||||||||||||||    
T  9441937 aacataaccctgcctagtgtatggaaattccttctt 9441972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 9441886 - 9441935
Alignment:
Q  25 gattgatgaagtaaaacacatagcagatcgggaaacagaacgaaatagct 74  Q
    ||||||||||| ||| ||||||| ||||| |||||||||| |||||||||    
T  9441886 gattgatgaagaaaagcacataggagatcaggaaacagaatgaaatagct 9441935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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