View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_high_33 (Length: 303)
Name: NF17222_high_33
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 49514316 - 49514592
Alignment:
| Q |
17 |
attcctgacatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataataattggt |
116 |
Q |
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| T |
49514316 |
attcctgacatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataataattggt |
49514415 |
T |
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| Q |
117 |
tgattttaactccttccaatactcaggtacctgcgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttgattggga |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49514416 |
tgattttaactccttccaatactcaggtacctacgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttgattggga |
49514515 |
T |
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| Q |
217 |
ggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttcctgatgagcaggtcagcactgccctagcctatg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49514516 |
ggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttactgatgagcaggtcagcactgccctagcctatg |
49514592 |
T |
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Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 27745894 - 27746169
Alignment:
| Q |
17 |
attcctgacatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataataattggt |
116 |
Q |
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||||||||| ||||||| ||||| |||||| || |||||| ||||| ||||||| |||| || | ||||||| ||||||| |||||||||||||||| |
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| T |
27745894 |
attcctgacttttgggagttcaaacaggagtctgaggatgtcgtgactgaggtatataacacatg-atatgcttatttatgctctatgataataattggt |
27745992 |
T |
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| Q |
117 |
tgattttaactccttccaatactcaggtacctgcgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttgattggga |
216 |
Q |
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||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27745993 |
atattttgactcctatcaatgctcaggtacctgcaaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttacttggga |
27746092 |
T |
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| Q |
217 |
ggatgatgatccctttcgcaaaaggaccttgagtcgaaaatttcctgatgagcaggtcagcactgccctagcctatg |
293 |
Q |
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|||||||| ||| ||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||| ||||| |
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| T |
27746093 |
tgatgatgacccccttcgcaaaaggaccttgagacggaaatttactgatgagcaggttagcactgccctagtctatg |
27746169 |
T |
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