View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_high_5 (Length: 549)
Name: NF17222_high_5
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 53460067 - 53460580
Alignment:
| Q |
17 |
cataggataaacaagaaataagaatggtgctgtttaagagtacaaaaccattcaaaatgttgcataaaggaagacatcgaatcagaaagggtcactaact |
116 |
Q |
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| T |
53460067 |
cataggataaacaagaaataagaatggtgttgtttaagagtacaaaaccattcgaaatgttgcataaaggaagacatcgaatcagaaagggtcacgaact |
53460166 |
T |
|
| Q |
117 |
ttgtcaagtgtgcaagtttaccatgataaggagttccaaaaggtagagagatattgatatcttgaaaacttgaaacataaatagcattcaaccataattg |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53460167 |
ttgtcaagcgtgcaagtttaccatgataaggagttccaataggtagagagatattgatatcttgaaaacttgaaacataaatagcattcaaccataattg |
53460266 |
T |
|
| Q |
217 |
tagaagtcaaagaaggcaacctgcatttgaaaggtaatcttgactctttgaaagagtgtcatataagtcagtgcaaaattcataaagccaagtcaaaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53460267 |
tagaagtcaaagaaggcaacctgcatttgaaaggtaatcttgactctttgaaagagtgtcatataagtcagtgcaaaattcataaagccaagtcaaaatg |
53460366 |
T |
|
| Q |
317 |
tttacttaatataacatcctttccctcacgaagaaatcaggctaaggaaaggaatgcaatgtactcgttatctgaaccatctttttgctttgattgattg |
416 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53460367 |
tttacttaatataatatcctttccctcacgaagaaatcaggctaaggaaaggaatgcaatgtactcgttatctgaaccatctttttgctttgattgattg |
53460466 |
T |
|
| Q |
417 |
ttttggatgaattgaatataccttgaagaagttaagtttgctttgagggattgacattatcaagcatagacctaaaagcatcgtgagttatctcaaaaaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53460467 |
ttttggatgaattgaatataccttgaagaagttaagtttgctttgagggattgacattatcaagcatagacctaaaagcatcgtgagttatctcaaaaaa |
53460566 |
T |
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| Q |
517 |
tctagggttgatag |
530 |
Q |
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|||||||||||||| |
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| T |
53460567 |
tctagggttgatag |
53460580 |
T |
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