View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17222_high_50 (Length: 217)
Name: NF17222_high_50
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_high_50 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 47267143 - 47266927
Alignment:
| Q |
1 |
gaacacattctttcaactcaactggtttatacccagagtattcttgcagggctgatggctgtcacatacaaaaaattaatcataaatgcattgaaccacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47267143 |
gaacacattctttcaactcaactggtttatacccagagtattcttgcagggctgatggctgtcacatacaaaaaattaatcataaatgcattgaaccacc |
47267044 |
T |
|
| Q |
101 |
aaccatcaatgttaatttggtaatactaacacttttacgtataaagtaagccattaattatatgatcaaatacttgcccagggataagttttgggccaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47267043 |
aaccatcaatgttaatttggtaatactaacacttttacgtataaagtaagccattaattatatgatcaaatacttgcccagggataagttttgggccaaa |
47266944 |
T |
|
| Q |
201 |
caatgaatctagcaagc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47266943 |
caatgaatctagcaagc |
47266927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47259545 - 47259493
Alignment:
| Q |
1 |
gaacacattctttcaactcaactggtttatacccagagtattcttgcagggct |
53 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47259545 |
gaacacattctctcaactcaactggtttatactcagagtattcttgcagggct |
47259493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University