View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17222_low_1 (Length: 722)

Name: NF17222_low_1
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17222_low_1
NF17222_low_1
[»] chr7 (7 HSPs)
chr7 (335-706)||(31013744-31014121)
chr7 (94-250)||(31014240-31014400)
chr7 (8-99)||(31014617-31014708)
chr7 (639-686)||(19974775-19974822)
chr7 (627-685)||(20001140-20001198)
chr7 (639-681)||(19981472-19981514)
chr7 (305-334)||(31014194-31014223)
[»] chr3 (17 HSPs)
chr3 (387-703)||(53059045-53059363)
chr3 (387-703)||(53340767-53341086)
chr3 (512-703)||(53067978-53068169)
chr3 (162-305)||(53059591-53059735)
chr3 (162-305)||(53068817-53068961)
chr3 (558-703)||(53062232-53062377)
chr3 (94-305)||(37418896-37419123)
chr3 (201-292)||(53062680-53062772)
chr3 (620-703)||(37418319-37418402)
chr3 (387-483)||(53068493-53068589)
chr3 (387-482)||(37418534-37418629)
chr3 (8-56)||(53063080-53063128)
chr3 (642-703)||(53972116-53972177)
chr3 (8-56)||(53060100-53060148)
chr3 (94-162)||(53059749-53059818)
chr3 (58-99)||(53060036-53060077)
chr3 (58-99)||(53072057-53072098)
[»] chr4 (2 HSPs)
chr4 (162-305)||(34036037-34036181)
chr4 (58-99)||(34036434-34036475)
[»] chr2 (4 HSPs)
chr2 (162-305)||(6687807-6687951)
chr2 (622-688)||(6687235-6687301)
chr2 (8-56)||(6688311-6688359)
chr2 (58-99)||(6688254-6688295)


Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 335 - 706
Target Start/End: Complemental strand, 31014121 - 31013744
Alignment:
Q  335 ttgaggaatgtgttcgccgattactagctgctttaatttgagaaaagtaagcgtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatg 434  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014121 ttgaggaatgtgttcgcggattactagctgttttaatttgagaaaagtaagcgtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatg 31014022  T
Q  435 ttaagttcaagggtttcagttcgtctttatattgctgcaataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgatt 534  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014021 ttaagttcaagggtttcagttcatctttgtattgctgcgataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgatt 31013922  T
Q  535 gtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagca------aagagtggttgttttgatgaagacattgtgattggtgaaatc 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  31013921 gtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaagacaaagagtggttgttttgatgaagacattgtgattggtgaaatc 31013822  T
Q  629 gagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtag 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013821 gagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtag 31013744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 31014400 - 31014240
Alignment:
Q  94 tgtaaaaaatggggacttggacacagtgggaacttgtctgcatgaattaaaata----caagaaaacattagattgtgatttgttttgtaaaatcaaaca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  31014400 tgtaaaaaatggggacttggacacagtgggaacttgtctgcatgaattaaaatatatacaagaaaacattagattgtgatttgttttgtaaaatcaaaca 31014301  T
Q  190 aactcttacttaccagctttatactgagccttgtgccttggaaagcaagaaaagaggaata 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014300 aactcttacttaccagctttatactgagccttgtgccttggaaagcaagaaaagaggaata 31014240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 31014708 - 31014617
Alignment:
Q  8 tgagatgaaaggcattccggaataatctttggatcctcccaattgtccttattctcgatcccattttctatctcctgttaacaatatgtaaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014708 tgagatgaaaggcattccggaataatctttggatcctcccaattgtccttattctcgatcccattttctatctcctgttaacaatatgtaaa 31014617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 639 - 686
Target Start/End: Original strand, 19974775 - 19974822
Alignment:
Q  639 actgagagccataatggtttccacctctttgaaaggatgcttgtggcg 686  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  19974775 actgagagccatagtggtttccatctctttgaaaggatgcttgtggcg 19974822  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 685
Target Start/End: Original strand, 20001140 - 20001198
Alignment:
Q  627 tcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggc 685  Q
    ||||||||| | ||||||||||||| ||||||||| ||||| || ||||||||||||||    
T  20001140 tcgagagtggaaactgagagccatattggtttccatctcttagagaggatgcttgtggc 20001198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 681
Target Start/End: Original strand, 19981472 - 19981514
Alignment:
Q  639 actgagagccataatggtttccacctctttgaaaggatgcttg 681  Q
    ||||||||||||||||||||||| |||||||| |||| |||||    
T  19981472 actgagagccataatggtttccatctctttgagaggacgcttg 19981514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 31014223 - 31014194
Alignment:
Q  305 tttcaattcctctagaatgggaaaggacaa 334  Q
    ||||||||||||||||||||||||||||||    
T  31014223 tttcaattcctctagaatgggaaaggacaa 31014194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 4e-80; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 387 - 703
Target Start/End: Complemental strand, 53059363 - 53059045
Alignment:
Q  387 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagttggg 486  Q
    |||||||| |||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||    
T  53059363 gtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattgctgcaatgataagtttgg 53059264  T
Q  487 ttataaccttgggtttgcatgcagcacaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagca 586  Q
    ||||  | ||||||| | ||||||||||| ||||||||||||||||| |||||||||| ||||| |  |  |||||||||| |||||||||||||| |||    
T  53059263 ttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaacatgactgca 53059164  T
Q  587 aagagtggttgttttgatgaagacattgtgattggtgaaatcg--agagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtgg 684  Q
    ||||||||||   || |||||| |  | || | | ||||||||   |||||| |||||||||||| ||||||||||||||||| || |||||||||||||    
T  53059163 aagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgttcgagtgaggactgagagccacaatggtttccacctcttggagaggatgcttgtgg 53059064  T
Q  685 cgacggtgtctttggttgg 703  Q
    |||||||||||||||||||    
T  53059063 cgacggtgtctttggttgg 53059045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 387 - 703
Target Start/End: Original strand, 53340767 - 53341086
Alignment:
Q  387 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagttggg 486  Q
    |||||||| |||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  53340767 gtgaatatgttggaagctaatttcatgtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatggctgcaataataagttggg 53340866  T
Q  487 ttataaccttgggtttgc---atgcagcacaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgaca 583  Q
    | | |   ||||||| |    ||  |  |||| |||||| |||||||||| |||||||||| ||||| | ||| ||||||| ||||||||||| |||||     
T  53340867 tgaaattgttgggttcgtccaatctaaaacaacatttgaggcggaatgatagtattggcagtgtgttgtcgcacgatagcaagactgagtaaatatgact 53340966  T
Q  584 gcaaagagtggttgttttgatgaagacattgtgattggtgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtg 683  Q
    ||||| ||||||| |||   ||||||   |||||| ||| ||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||||||    
T  53340967 gcaaatagtggttatttccgtgaagattgtgtgatcggtaaaatcgagagtgaggactgagatacataatggtttccacctctttgagaggatgcttgtg 53341066  T
Q  684 gcgacggtgtctttggttgg 703  Q
    ||||||||||||||||||||    
T  53341067 gcgacggtgtctttggttgg 53341086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 512 - 703
Target Start/End: Complemental strand, 53068169 - 53067978
Alignment:
Q  512 acaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaagagtggttgttttgatgaagaca 611  Q
    |||| ||||||||||||||||| |||||||  | ||||| | ||  ||||||||||||||||||||   || ||||| ||||||||||||  ||||||      
T  53068169 acaacatttgaagcggaatgatcgtattggatgtgtgttgtcgcgcgatagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagatt 53068070  T
Q  612 ttgtgattggtgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttgg 703  Q
     |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  53068069 atgtgatcggtgaaattgagagtgaagactgagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgg 53067978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 53059735 - 53059591
Alignment:
Q  162 attgtgatttgttttgtaaaatcaaacaaactcttacttaccagctttatactgagcctt-gtgccttggaaagcaagaaaagaggaatagttttgctat 260  Q
    ||||||| |||||||||||||| |||||||||||||||||||||  |||||||||| ||  ||||| ||||||||| ||| |||||||||| |||| |||    
T  53059735 attgtgaattgttttgtaaaatgaaacaaactcttacttaccagagttatactgagactccgtgccctggaaagcaggaagagaggaataggtttgttat 53059636  T
Q  261 cagaaagcttggctgtcaccaaattgggcaagcaattgagcttgt 305  Q
    |||||||||||||||||||||||||||||||||| |||| |||||    
T  53059635 cagaaagcttggctgtcaccaaattgggcaagcatttgatcttgt 53059591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 53068961 - 53068817
Alignment:
Q  162 attgtgatttgttttgtaaaatcaaacaaactcttacttaccagctttatactgagcctt-gtgccttggaaagcaagaaaagaggaatagttttgctat 260  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||  ||||  ||||||||| ||| |||||||||| |||| |||    
T  53068961 attgtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgctctggaaagcaggaagagaggaataggtttgttat 53068862  T
Q  261 cagaaagcttggctgtcaccaaattgggcaagcaattgagcttgt 305  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||    
T  53068861 cagaaagcttggatgtcaccaaattgggcaagcatttgatcttgt 53068817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 558 - 703
Target Start/End: Complemental strand, 53062377 - 53062232
Alignment:
Q  558 gatagcatgactgagtaaacatgacagcaaagagtggttgttttgatgaagacattgtgattggtgaaatcgagagtgaagactgagagccataatggtt 657  Q
    ||||||||||||||||||||||||| ||||||||  ||||| ||  |||||     ||| | |||||||||||||||||||||  |||||||||||||||    
T  53062377 gatagcatgactgagtaaacatgactgcaaagagatgttgtcttcgtgaagtttgggtggtcggtgaaatcgagagtgaagacatagagccataatggtt 53062278  T
Q  658 tccacctctttgaaaggatgcttgtggcgacggtgtctttggttgg 703  Q
    |||||||||| || ||||||||||||||||||||||||||||||||    
T  53062277 tccacctcttggagaggatgcttgtggcgacggtgtctttggttgg 53062232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 37419123 - 37418896
Alignment:
Q  94 tgtaaaaaatggggacttggacacagtgggaacttgtctgcatgaatta-aaatacaagaaaacattag--------------attgtgatttgttttgt 178  Q
    |||||||||||||||| |||||| ||||||  | ||||||||||||||| ||| ||||| |||||||||              |||||||||||||||||    
T  37419123 tgtaaaaaatggggacctggacatagtgggtccatgtctgcatgaattacaaagacaagtaaacattagaaatctatgatcatattgtgatttgttttgt 37419024  T
Q  179 aaaatcaaacaaactcttacttaccagctttatactgagcct-tgtgccttggaaagcaagaaaagaggaatagttttgctatcagaaagcttggctgtc 277  Q
    ||||| |||||||||  |||| |||| |||||||||||| ||   |||  ||||||||||||| |||||||||| || ||||||| ||||||||||||||    
T  37419023 aaaatgaaacaaactagtactgaccatctttatactgagactgactgcactggaaagcaagaagagaggaataggttcgctatcataaagcttggctgtc 37418924  T
Q  278 accaaattgggcaagcaattgagcttgt 305  Q
    ||||||||||||||||| |||| |||||    
T  37418923 accaaattgggcaagcatttgatcttgt 37418896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 53062772 - 53062680
Alignment:
Q  201 accagctttatactgagcct-tgtgccttggaaagcaagaaaagaggaatagttttgctatcagaaagcttggctgtcaccaaattgggcaag 292  Q
    ||||||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  53062772 accagctttatactgagactctgtgccttggaaagcaagaagaaaggaatagctttgctatcagaaagcttggctgtcactaaattgggcaag 53062680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 620 - 703
Target Start/End: Complemental strand, 37418402 - 37418319
Alignment:
Q  620 ggtgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttgg 703  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  37418402 ggtgaaatcgagggtgaagactgagagccacaatgggttccacctctttgagaggatgcttgtggcgacagtgtctttggttgg 37418319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 53068589 - 53068493
Alignment:
Q  387 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagtt 483  Q
    |||||||| |||||| ||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  53068589 gtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtt 53068493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 37418629 - 37418534
Alignment:
Q  387 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcgtctttatattgctgcaataataagt 482  Q
    ||||||||||||||| |||||||||||||||||| || |||  ||||  | |||||||||||||||||| |||||| |||||||||||||||||||    
T  37418629 gtgaatattttggaagctaatttcatgtctaaaggataaaaatacatacttagttcaagggtttcagtttgtctttgtattgctgcaataataagt 37418534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 53063128 - 53063080
Alignment:
Q  8 tgagatgaaaggcattccggaataatctttggatcctcccaattgtcct 56  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  53063128 tgagatgaaaggcattccggaatgatctttgggtcctcccaaatgtcct 53063080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 703
Target Start/End: Original strand, 53972116 - 53972177
Alignment:
Q  642 gagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttgg 703  Q
    |||| ||||||||| |||||||||||||| |||||| |||||| | ||| ||||||||||||    
T  53972116 gagatccataatggcttccacctctttgagaggatggttgtgggggcggagtctttggttgg 53972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 53060148 - 53060100
Alignment:
Q  8 tgagatgaaaggcattccggaataatctttggatcctcccaattgtcct 56  Q
    ||||||||||||||||| |||| ||||||||| ||||||||| ||||||    
T  53060148 tgagatgaaaggcattctggaacaatctttgggtcctcccaaatgtcct 53060100  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 53059818 - 53059749
Alignment:
Q  94 tgtaaaaaatggggacttggacacagtgggaacttgtctgcatgaatta-aaatacaagaaaacattaga 162  Q
    ||||||||||||||||||||| | ||||||  | ||||||||||||||| ||| ||  ||||||||||||    
T  53059818 tgtaaaaaatggggacttggaaatagtgggtccatgtctgcatgaattacaaagacgggaaaacattaga 53059749  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 53060077 - 53060036
Alignment:
Q  58 attctcgatcccattttctatctcctgttaacaatatgtaaa 99  Q
    |||||| ||||||||||||||||||| ||||||||| |||||    
T  53060077 attctctatcccattttctatctcctattaacaataagtaaa 53060036  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 53072098 - 53072057
Alignment:
Q  58 attctcgatcccattttctatctcctgttaacaatatgtaaa 99  Q
    |||||| ||||||||||||||||||| ||||||||| |||||    
T  53072098 attctctatcccattttctatctcctattaacaataagtaaa 53072057  T

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Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 34036181 - 34036037
Alignment:
Q  162 attgtgatttgttttgtaaaatcaaacaaactcttacttaccagctttatactgagcctt-gtgccttggaaagcaagaaaagaggaatagttttgctat 260  Q
    ||||| |||||||||| |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||     
T  34036181 attgtaatttgttttgcaaaatcaaacaaactcttaaataccagctttatactgagccttcgtgccttggaaagcaagaaaagaggaatagctttgctac 34036082  T
Q  261 cagaaagcttggctgtcaccaaattgggcaagcaattgagcttgt 305  Q
     ||||||||||||||||||||||||||||||||| |||| |||||    
T  34036081 tagaaagcttggctgtcaccaaattgggcaagcatttgatcttgt 34036037  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 34036475 - 34036434
Alignment:
Q  58 attctcgatcccattttctatctcctgttaacaatatgtaaa 99  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  34036475 attctctatcccattttctatctcctgttaacaataagtaaa 34036434  T

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Target: chr2 (Bit Score: 93; Significance: 7e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 6687951 - 6687807
Alignment:
Q  162 attgtgatttgttttgtaaaatcaaacaaactcttacttaccagctttatactgagcctt-gtgccttggaaagcaagaaaagaggaatagttttgctat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||  ||||||||||||||||||| |||||||||| || | |||    
T  6687951 attgtgatttgttttgtaaaatcaaacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaataggttcgttat 6687852  T
Q  261 cagaaagcttggctgtcaccaaattgggcaagcaattgagcttgt 305  Q
    || ||||||||||||||||||||||||||||||| |||| |||||    
T  6687851 cacaaagcttggctgtcaccaaattgggcaagcatttgatcttgt 6687807  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 622 - 688
Target Start/End: Complemental strand, 6687301 - 6687235
Alignment:
Q  622 tgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgac 688  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  6687301 tgaaatcgagagttaagactgagagccataatggtttccatctcttcgagaggatgcttgtggcgac 6687235  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 6688359 - 6688311
Alignment:
Q  8 tgagatgaaaggcattccggaataatctttggatcctcccaattgtcct 56  Q
    ||||||||||||||||| |||| ||||||||| |||||||||| |||||    
T  6688359 tgagatgaaaggcattctggaacaatctttggttcctcccaatagtcct 6688311  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 6688295 - 6688254
Alignment:
Q  58 attctcgatcccattttctatctcctgttaacaatatgtaaa 99  Q
    |||||| ||||||||||||||||||||| ||||||| |||||    
T  6688295 attctctatcccattttctatctcctgtaaacaataagtaaa 6688254  T

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