View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_10 (Length: 493)
Name: NF17222_low_10
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 77 - 475
Target Start/End: Complemental strand, 35728142 - 35727758
Alignment:
| Q |
77 |
tataaataatgcctaaataattttgatcaattaatttctcatgttcctttctctaatttataacnnnnnnnnnccaaataaaaaagtattctcatgnnnn |
176 |
Q |
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| T |
35728142 |
tataaataatgcctaaataattttgatcaattaatttctcatgttcctttctctaatttataac-------------atataaa-gtattctcatgaaaa |
35728057 |
T |
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| Q |
177 |
nnngttatcatatagtctgtacattctttgattttgaacatgtaggcaacttagcatgtatatataacacacaattttattttatccgttatatagatcc |
276 |
Q |
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||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35728056 |
aaagttatcatatagtttgtacattctttgattttgaacatttaagcaacttagcatgtatatataacacacaattttatttcatccgttatatagatcc |
35727957 |
T |
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| Q |
277 |
atcatatgaaacgagagattcggatttctatgttcctcgtgatgaggcgtttgctgagataaaggacatacaattcaacacaaccacagcgtcctcagga |
376 |
Q |
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| T |
35727956 |
atcatatgaaacgagagattcggatttctatgttcctcgtgatgaggcgtttgctgagataaaggacatacaattcaacacaaccacagcgtcctcagga |
35727857 |
T |
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| Q |
377 |
gtaaaaacaattttggaatccttggacacaattctcactgacataaatcttggatttgacagctttgaagacatggacgaactttacaaacaaggattt |
475 |
Q |
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| T |
35727856 |
gtaaaaacaattttgcaatccttggacacaattctcactgacataaatcttggatttgacagctttgaagacatagacgaactttacaaacaaggattt |
35727758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 35728229 - 35728166
Alignment:
| Q |
17 |
aatatccgtatccaagacgttgtcgtaccggtcgaaagcattctaatacaggttatctattata |
80 |
Q |
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| T |
35728229 |
aatatccgtatccaagacgttgtcgtaccggtcgaaagcattctaatacaggttatctattata |
35728166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 35722431 - 35722491
Alignment:
| Q |
17 |
aatatccgtatccaagacgttgtcgtaccggtcgaaagcattctaatacaggttatctatt |
77 |
Q |
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| T |
35722431 |
aatatccatatcctagacgctgtcgcaccggtcgaaagcattctgatacaggttatctatt |
35722491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 35706862 - 35706944
Alignment:
| Q |
393 |
aatccttggacacaattctcactgacataaatcttggatttgacagctttgaagacatggacgaactttacaaacaaggattt |
475 |
Q |
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| T |
35706862 |
aatccttagacacaattctcacagatccaaatcttggatttgctagctttgaagacatagaagaaatttacaaagaaggattt |
35706944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 35706609 - 35706669
Alignment:
| Q |
17 |
aatatccgtatccaagacgttgtcgtaccggtcgaaagcattctaatacaggttatctatt |
77 |
Q |
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||||||| ||||||||||| ||||| || ||||||||||||||| || ||||||||||||| |
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| T |
35706609 |
aatatccatatccaagacgctgtcgcactggtcgaaagcattctgatgcaggttatctatt |
35706669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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