View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_12 (Length: 438)
Name: NF17222_low_12
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 6821806 - 6821398
Alignment:
| Q |
19 |
ttaaatttatcaatgaggtggaaagacatagttatgcggcaaaacttatttgaattagttataaaatattgtattattcacgtccaataaatttataaat |
118 |
Q |
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| T |
6821806 |
ttaaatttatcaatgaggtggaaagacatagttatgtggcaaagcttatttgaattagttataaaatattttattattcacgtcatataaatttatcaat |
6821707 |
T |
|
| Q |
119 |
gatgtgagtggtgtt-agttgttcagatcaagaggagacaacggtgaggaatcatatgttagcgataatctttataaagacggccagacgggatgactta |
217 |
Q |
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| T |
6821706 |
gatgtgagtggtgtttagtcgttcagatcaagaggagacaacagtgaggaatcatatgttagcgataatttttataaagacgatcagacaagatgactta |
6821607 |
T |
|
| Q |
218 |
aaaactttcctgtatgatggaactgta-aggagtattttgttagtttgtatatttctcttgaaaaccctaaataatcttacatgacaacgagtcaaactc |
316 |
Q |
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| T |
6821606 |
aaaacttttatgtatgatggaactgtttaggagtattttgttagtttgtatatttctcttgaaaatcctaaataatcttacatgaca--gagtcaaactc |
6821509 |
T |
|
| Q |
317 |
tattggaggcacaaccttacctattccctcacattggtaagattgcacgctttaaaatttgtagatttgtctcagctagtgattagatcactaattcttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6821508 |
tattggaggcacaaccttacctattccctcacattggtaagattgcacgctttaaaatttgtagatttgtctcagctagtgattagatcactaattcttc |
6821409 |
T |
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| Q |
417 |
tctattccttt |
427 |
Q |
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| T |
6821408 |
tctattccttt |
6821398 |
T |
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