View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17222_low_15 (Length: 406)
Name: NF17222_low_15
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17222_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Original strand, 34059855 - 34060232
Alignment:
| Q |
13 |
atattatcaagtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaact |
112 |
Q |
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| T |
34059855 |
atattatcaagtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaact |
34059954 |
T |
|
| Q |
113 |
ctaaaagagcagtacaacagtgcatgcttcctagtatagctgnnnnnnnnnnngacagacttcgataaaatcaaccaatcatcacagaaaacagttgatt |
212 |
Q |
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| T |
34059955 |
ctaaaagagcagtacaacagtgcatgctacctagtatagctgtttttttt----acatacttcgataaaatcaaccaatcatcacagaaaacagttgatt |
34060050 |
T |
|
| Q |
213 |
caattcagagattgagagttaagtttcaaggcaattttgatctgtactcaattgtattcatagttgatacaagatcatcagtatcggttagtaaactcgc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
34060051 |
caattcagagattgagagttaagtttcaaggcaattttgatctgtactcaattgtattcatagttgatgcaagatcatcagtatcagttagtaaactcgc |
34060150 |
T |
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| Q |
313 |
tcatcacatcagaaaaaagtgcaaaataattctccaaagagtacgacaactttatcaactttgcaatgatcttacacaggtt |
394 |
Q |
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| T |
34060151 |
tcatcacatcagaaaaaagtgcaaaataattctccaaagagtacgacaactttatcaactttgcaatgatcttacacaggtt |
34060232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 52 - 384
Target Start/End: Complemental strand, 22232376 - 22232039
Alignment:
| Q |
52 |
aaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactctaaaagagcagtacaacagtgcatgcttcctagtatag |
151 |
Q |
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||||||||||| |||||||||||| |||||| |||||| ||||||||||||||| || |||||||||| |||||| |||||||| || ||| ||| |
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| T |
22232376 |
aaaagcactgcagagattgaagaggatttgcaatattggcttaggttcatagtttccaattccaaaagagcaggacaacaatgcatgctgccaagtgtag |
22232277 |
T |
|
| Q |
152 |
ctgnnnnnnnnnnngacagacttcgataaaatcaaccaatcatcacagaa---------aacagttgattcaattcagagattgagagttaagtttcaag |
242 |
Q |
| |
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|| ||| |||||||||||||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||| |
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| T |
22232276 |
ctattgttctc----acacacttcgataaaatcaaccaatcatcacaaaatctgcagcaaacggtagattcaattcagagattgagagacaagtttcaag |
22232181 |
T |
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| Q |
243 |
gcaattttgatctgtactcaattgtattcatagttgatacaagatcatcagtatcggttagtaaactcgctcatcacatcagaaaaaagtgcaaaataat |
342 |
Q |
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|| || ||||| | ||| || |||||||| ||||| |||||||||||| ||| ||| |||||||| ||||||||||| |||| | |||||||| | | |
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| T |
22232180 |
gctatgttgatttctaccaaactgtattcacggttgacgcaagatcatcagcatcagttggtaaactcactcatcacatccgaaagacgtgcaaaacagt |
22232081 |
T |
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| Q |
343 |
tctccaaagagtacgacaactttatcaactttgcaatgatct |
384 |
Q |
| |
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||| |||||||||| || | |||||||||||||||| ||||| |
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| T |
22232080 |
tctgcaaagagtaccacgagtttatcaactttgcaacgatct |
22232039 |
T |
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