View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17222_low_17 (Length: 401)

Name: NF17222_low_17
Description: NF17222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17222_low_17
NF17222_low_17
[»] chr4 (8 HSPs)
chr4 (1-165)||(28020617-28020781)
chr4 (224-387)||(28020397-28020558)
chr4 (227-289)||(44111756-44111823)
chr4 (224-289)||(19150790-19150860)
chr4 (227-289)||(48195960-48196027)
chr4 (227-289)||(48361122-48361189)
chr4 (227-286)||(30191966-30192030)
chr4 (227-286)||(32714283-32714347)
[»] chr5 (2 HSPs)
chr5 (224-301)||(38394495-38394577)
chr5 (224-289)||(13789743-13789813)
[»] scaffold0778 (1 HSPs)
scaffold0778 (225-302)||(5270-5351)
[»] chr3 (5 HSPs)
chr3 (224-289)||(12064920-12064990)
chr3 (226-289)||(51517026-51517094)
chr3 (224-289)||(53441918-53441988)
chr3 (224-304)||(21662953-21663038)
chr3 (261-301)||(44518035-44518075)
[»] chr2 (6 HSPs)
chr2 (227-306)||(20555328-20555411)
chr2 (225-292)||(11030200-11030272)
chr2 (224-289)||(38554469-38554539)
chr2 (260-303)||(4044572-4044615)
chr2 (224-289)||(12962772-12962842)
chr2 (260-301)||(30758719-30758760)
[»] chr8 (7 HSPs)
chr8 (227-306)||(5031534-5031618)
chr8 (259-301)||(13013969-13014011)
chr8 (224-289)||(10839830-10839899)
chr8 (224-290)||(7693043-7693114)
chr8 (227-289)||(35149679-35149746)
chr8 (227-292)||(8803298-8803368)
chr8 (225-289)||(24618969-24619038)
[»] chr7 (7 HSPs)
chr7 (224-295)||(29365626-29365702)
chr7 (227-289)||(28677328-28677395)
chr7 (227-300)||(2680858-2680936)
chr7 (227-292)||(6838445-6838515)
chr7 (224-289)||(41850663-41850733)
chr7 (227-303)||(24163339-24163420)
chr7 (224-284)||(48838379-48838444)
[»] chr1 (5 HSPs)
chr1 (227-301)||(26070894-26070973)
chr1 (260-306)||(2351127-2351173)
chr1 (260-297)||(38737934-38737971)
chr1 (260-306)||(47844641-47844687)
chr1 (260-301)||(38040275-38040316)
[»] chr6 (1 HSPs)
chr6 (260-292)||(17265729-17265761)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 28020781 - 28020617
Alignment:
Q  1 tcgggaaggtggaactggtcgcccttataaaaacacattccaacatttatttgtaaaatttgggaaattcaaacttggaaatacaagtatcatgagtgtt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  28020781 tcgggaaggtggaactggtcgcccttataaaatcacattccaacatttatttgtcaaatttgggaaattcaaacttggaaatacaagtatcataagtgtt 28020682  T
Q  101 gtggttgttccccgatatgaattgaccatggcgacaatcgttggagtgaaatcatactcccctcc 165  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  28020681 gtggttgttccccgatatgaattgaccatggcgacaatcgttagagtgaaatcatacttccctcc 28020617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 224 - 387
Target Start/End: Complemental strand, 28020558 - 28020397
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-aaaaaagtaaaatgtttcttataaataggatcgaagagagtaatattacatagagattctaat 322  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||| |||| ||||||||   ||||||||||||||||||    
T  28020558 gtatagaatatagaccaaataaatcattaatgtaatcaaaaaagtaaaatatttcttataaatagaatcggagagagta---ttacatagagattctaat 28020462  T
Q  323 tcatttgccatttaaactaccggtccatccaatctagacaacgtgaaaagcataacaatcatcct 387  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  28020461 tcatctgccatttaaactaccagtccatcgaatctagacaacgtgaaaagcataacaatcatcct 28020397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 44111823 - 44111756
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||||||||||||||| ||| |||||||     |||||||| |||||||||||||||||||||    
T  44111823 tagaatatagaccaaatacatcatttatgtaattaatcaaaaaagtcaaatgtttcttataaatagga 44111756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 19150790 - 19150860
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaataaa-----aaagtaaaatgtttcttataaatagga 289  Q
    |||||||||||||||||||||||| ||| ||| ||| ||     |||||||||||||||||||||||||||    
T  19150790 gtatagaatatagaccaaatacatcatttatgcaatgaatcgaaaaagtaaaatgtttcttataaatagga 19150860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 48195960 - 48196027
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||||||    
T  48195960 tagaatatagaccaaatacatcatttatgcaatgaaccaaaaaagtcaaatgtttcttataaatagga 48196027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 48361122 - 48361189
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||||||    
T  48361122 tagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaatagga 48361189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 30191966 - 30192030
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaata 286  Q
    ||||||||||||||||||||| ||| ||| |||     |||||||| ||||||||||||||||||    
T  30191966 tagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttcttataaata 30192030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 32714347 - 32714283
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaata 286  Q
    |||||||||||| |||||||| ||| |||||||     |||||||| ||||||||||||||||||    
T  32714347 tagaatatagactaaatacatcatttatgtaatgaatcaaaaaagtcaaatgtttcttataaata 32714283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 38394495 - 38394577
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcgaagagagta 301  Q
    ||||||||| |||||||||||||| ||| ||| |||     |||||||||||||||||||||||||||||||||||| |||||    
T  38394495 gtatagaatgtagaccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaataggatcgaagggagta 38394577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 13789813 - 13789743
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||| |||||||||||||| ||| ||| |||     ||||||||||||||||||||||||||||||    
T  13789813 gtatagaatgtagaccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaatagga 13789743  T

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Target: scaffold0778 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 5351 - 5270
Alignment:
Q  225 tatagaatatagaccaaatacataattaatg----taataaaaaagtaaaatgtttcttataaataggatcgaagagagtaa 302  Q
    ||||||||||||||||||||||||||| |||     ||||||||||| ||||||||||||||||||||| |  |||||||||    
T  5351 tatagaatatagaccaaatacataatttatgcaatcaataaaaaagtcaaatgtttcttataaataggaccagagagagtaa 5270  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 12064990 - 12064920
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    |||||||||||||||||||||||| ||||||| |||     |||||||||||||||||||||||| |||||    
T  12064990 gtatagaatatagaccaaatacatcattaatgcaatgaatcaaaaaagtaaaatgtttcttataagtagga 12064920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 51517026 - 51517094
Alignment:
Q  226 atagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    |||||||||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||||||    
T  51517026 atagaatatagaccaaatacatcatttatgcaatgaaccaaaaaagtcaaatgtttcttataaatagga 51517094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 53441988 - 53441918
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||| || ||||||||||| ||| ||| |||     ||||||||||||||||||||||||||||||    
T  53441988 gtatagaatgtataccaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaatagga 53441918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 21662953 - 21663038
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcgaagagagtaata 304  Q
    ||||||| |||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||| || || || ||||||||    
T  21662953 gtatagattatagaccaaatacatcatttatgcaatgaatcaaaaaagttaaatgtttcttataaataagaccggagggagtaata 21663038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 44518075 - 44518035
Alignment:
Q  261 aaaaagtaaaatgtttcttataaataggatcgaagagagta 301  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  44518075 aaaaagtcaaagttttcttataaataggatcgaagagagta 44518035  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 20555328 - 20555411
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat----aaaaaagtaaaatgtttcttataaataggatcgaagagagtaatatt 306  Q
    ||||||||||||||||||||| ||| |||||||    |||||||| ||||||||| ||||||||||| || || ||||||||||    
T  20555328 tagaatatagaccaaatacattatttatgtaatgaataaaaaagttaaatgtttcctataaataggaccggagggagtaatatt 20555411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 11030272 - 11030200
Alignment:
Q  225 tatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcg 292  Q
    ||||||||||||||||||||||| ||| |||||||     |||||||| |||||||||||||| |||||||||    
T  11030272 tatagaatatagaccaaatacatcatttatgtaatgaatcaaaaaagtcaaatgtttcttatatataggatcg 11030200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 38554539 - 38554469
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    |||||||||||||||||||||||| ||| |||||||     |||| ||| |||||||||||||||||||||    
T  38554539 gtatagaatatagaccaaatacattatttatgtaatgaatcaaaatagtcaaatgtttcttataaatagga 38554469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 4044615 - 4044572
Alignment:
Q  260 aaaaaagtaaaatgtttcttataaataggatcgaagagagtaat 303  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||    
T  4044615 aaaaaagtaaattgtttcttatatataggatcgaagggagtaat 4044572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 12962772 - 12962842
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||| |||||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||||||    
T  12962772 gtataaaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaatagga 12962842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 30758760 - 30758719
Alignment:
Q  260 aaaaaagtaaaatgtttcttataaataggatcgaagagagta 301  Q
    |||||||| |||| |||||||||||||||| |||||||||||    
T  30758760 aaaaaagtcaaatatttcttataaataggaccgaagagagta 30758719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 5031534 - 5031618
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcgaagagagtaatatt 306  Q
    |||||||||||| |||||||| ||| ||| |||     |||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  5031534 tagaatatagactaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaataggagcgaagagagtattatt 5031618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 13014011 - 13013969
Alignment:
Q  259 taaaaaagtaaaatgtttcttataaataggatcgaagagagta 301  Q
    |||||||||||||||||||||||||||||||||| || |||||    
T  13014011 taaaaaagtaaaatgtttcttataaataggatcggagggagta 13013969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 10839830 - 10839899
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatg----taataaaaaagtaaaatgtttcttataaatagga 289  Q
    |||||||||||||||||||||||| ||| |||     ||| ||||||| |||||||||||||||||||||    
T  10839830 gtatagaatatagaccaaatacatcatttatgcaatgaatcaaaaagttaaatgtttcttataaatagga 10839899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 7693114 - 7693043
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggat 290  Q
    ||||| ||||||||| |||||||| ||| ||| |||     |||||||||||||||||||||||||||||||    
T  7693114 gtataaaatatagactaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaataggat 7693043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 35149746 - 35149679
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||||||    
T  35149746 tagaatatagaccaaatacatcatttatgcaattaatcaaaaaagtcaaatgtttcttataaatagga 35149679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 8803298 - 8803368
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcg 292  Q
    ||||||||||||||||||||| ||| |||||||     |||||||| |||| ||| |||||||||||||||    
T  8803298 tagaatatagaccaaatacatcatttatgtaatgaatcaaaaaagttaaatattttttataaataggatcg 8803368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 24619038 - 24618969
Alignment:
Q  225 tatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||||||||||||||||| ||| ||| |||     |||||||| ||| |||||||||||||||||    
T  24619038 tatagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaaggtttcttataaatagga 24618969  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 29365702 - 29365626
Alignment:
Q  224 gtatagaatatagaccaaatacataatt-----aatgtaataaaaaagtaaaatgtttcttataaataggatcgaag 295  Q
    |||||||||||||| ||||||||| |||     |||||| ||||||||| ||||||||||||||||||||| |||||    
T  29365702 gtatagaatatagatcaaatacatcatttatgcaatgtattaaaaaagtcaaatgtttcttataaataggaccgaag 29365626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 28677395 - 28677328
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||||||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||||||    
T  28677395 tagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaatagga 28677328  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 2680936 - 2680858
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcgaagagagt 300  Q
    ||||||||||| ||||||||| ||| || ||||     |||||||| |||| |||||||||||||||||||||| ||||    
T  2680936 tagaatatagatcaaatacatcatttatataatgaatcaaaaaagtcaaatatttcttataaataggatcgaagggagt 2680858  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 6838445 - 6838515
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcg 292  Q
    ||||||||||||||||||||| ||| ||| |||     |||||||| |||||||||||||||||| |||||    
T  6838445 tagaatatagaccaaatacatcatttatgcaatgaatcaaaaaagtcaaatgtttcttataaataagatcg 6838515  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 41850663 - 41850733
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaatagga 289  Q
    ||||| |||||||| ||||||||| ||| ||| |||     ||||||||||||||||||||||||||||||    
T  41850663 gtataaaatatagagcaaatacatcatttatgcaatgaatcaaaaaagtaaaatgtttcttataaatagga 41850733  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 24163339 - 24163420
Alignment:
Q  227 tagaatatagaccaaatacataatt-----aatgtaataaaaaagtaaaatgtttcttataaataggatcgaagagagtaat 303  Q
    |||||||||||||| |||||| |||     |||| | ||||||||| ||||||||||||||||||||  || ||||||||||    
T  24163339 tagaatatagaccatatacatcatttatgcaatgaattaaaaaagtgaaatgtttcttataaataggtccggagagagtaat 24163420  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 48838379 - 48838444
Alignment:
Q  224 gtatagaatatagaccaaatacataattaatgtaa-----taaaaaagtaaaatgtttcttataaa 284  Q
    ||||| |||||||||||||||||| ||| ||||||     ||||||||| ||||||||||||||||    
T  48838379 gtataaaatatagaccaaatacatcatttatgtaatgaattaaaaaagttaaatgtttcttataaa 48838444  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 26070894 - 26070973
Alignment:
Q  227 tagaatatagaccaaatacataattaatgtaat-----aaaaaagtaaaatgtttcttataaataggatcgaagagagta 301  Q
    ||||||||||||||||||||| ||| ||| |||     ||||||||||||||||||||||||||| || || ||||||||    
T  26070894 tagaatatagaccaaatacattatttatgcaatgaatcaaaaaagtaaaatgtttcttataaataagaccggagagagta 26070973  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 2351173 - 2351127
Alignment:
Q  260 aaaaaagtaaaatgtttcttataaataggatcgaagagagtaatatt 306  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||    
T  2351173 aaaaaagttaaatgtttcttataaataggatcggagggagtaatatt 2351127  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 38737971 - 38737934
Alignment:
Q  260 aaaaaagtaaaatgtttcttataaataggatcgaagag 297  Q
    |||||||| |||||||||||||||||||||||||||||    
T  38737971 aaaaaagtcaaatgtttcttataaataggatcgaagag 38737934  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 47844641 - 47844687
Alignment:
Q  260 aaaaaagtaaaatgtttcttataaataggatcgaagagagtaatatt 306  Q
    ||||||||||| ||||||||||| ||||||||| || ||||||||||    
T  47844641 aaaaaagtaaattgtttcttatatataggatcggagggagtaatatt 47844687  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 38040316 - 38040275
Alignment:
Q  260 aaaaaagtaaaatgtttcttataaataggatcgaagagagta 301  Q
    |||||||| ||||||||||||||||||||| ||||| |||||    
T  38040316 aaaaaagtcaaatgtttcttataaataggaccgaagggagta 38040275  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 17265761 - 17265729
Alignment:
Q  260 aaaaaagtaaaatgtttcttataaataggatcg 292  Q
    |||||||| ||||||||||||||||||||||||    
T  17265761 aaaaaagtcaaatgtttcttataaataggatcg 17265729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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